| Library | Read Count | Portion | Perfect |
| zika-la-1000 | 95,911 | 0.908% | 98.15% |
| 2001_day_1_ll-e | 325,932 | 3.085% | 98.83% |
| library_prep_negative_control_lp_cb7-9_2 | 4,011 | 0.038% | 94.76% |
| library_prep_negative_control_4 | 2,305 | 0.022% | 96.23% |
| ny238_plasmid_mix2_lp_cb7-9_2 | 229,648 | 2.173% | 98.78% |
| 2420_day_3_ll-e | 326,001 | 3.085% | 98.68% |
| 2012_day_5_ll-e | 290,275 | 2.747% | 98.02% |
| 2417_day_1_ul-b | 205,283 | 1.943% | 99.01% |
| zymobiomics_community_standard | 633,208 | 5.993% | 97.7% |
| 2427_day_5_ul-b | 286,866 | 2.715% | 98.37% |
| 2426_day_5_ul-b | 252,828 | 2.393% | 98.5% |
| 2187_day_3_ll-e | 258,191 | 2.444% | 97.73% |
| a549_18s_rrna_1 | 221,882 | 2.1% | 98.77% |
| 2012_day_5_ul-b | 281,000 | 2.66% | 98.0% |
| hrv14-5c-c3-4_52c | 386,802 | 3.661% | 98.44% |
| library_prep_negative_control_1 | 2,551 | 0.024% | 92.98% |
| library_prep_negative_control_2 | 3,498 | 0.033% | 93.22% |
| zika-her-reg | 360,419 | 3.411% | 98.4% |
| 2418_day_1_ll-e | 270,272 | 2.558% | 98.0% |
| hrv14-5c-c2-1_52c | 506,728 | 4.796% | 98.28% |
| hrv14-5c-c3-1_52c | 428,776 | 4.058% | 98.87% |
| 2184_day_1_ll-e | 268,264 | 2.539% | 98.21% |
| zika-her-dmso | 453,650 | 4.294% | 98.92% |
| a549_18s_rrna_2 | 174,226 | 1.649% | 97.49% |
| viral_strain_aliquot_lp_cb7-9_2 | 254,965 | 2.413% | 98.16% |
| 2008_day_3_ul-b | 330,984 | 3.133% | 98.54% |
| hrv14-5c-c2-4_52c | 474,016 | 4.486% | 98.49% |
| zika-la-100000 | 113,451 | 1.074% | 98.8% |
| zika-la-10 | 308,664 | 2.921% | 97.72% |
| zika-her-be | 507,356 | 4.802% | 98.97% |
| library_prep_negative_control_3 | 2,613 | 0.025% | 90.47% |
| 2184_day_1_ul-b | 246,290 | 2.331% | 98.9% |
| hrv14-5c-c3-1_57c | 491,729 | 4.654% | 98.82% |
| zika-la-100 | 114,067 | 1.08% | 98.32% |
| 2183_day_1_ll-e | 316,756 | 2.998% | 97.87% |
| negative_rt-pcr_control_l_cb7-9_2 | 1,478 | 0.014% | 94.93% |
| 2015_day_8_ll-e | 336,408 | 3.184% | 98.42% |
| hrv14-5c-c2-1_57c | 526,791 | 4.986% | 98.93% |
| zika-la-10000 | 18,028 | 0.171% | 95.0% |
| 2183_day_1_ul-b | 253,749 | 2.402% | 97.15% |
| Total: | 10,565,872 | 100.0% | |