Nextflow workflow report

[distraught_poisson]

Run times

11-Nov-2020 15:36:34 - 12-Nov-2020 06:30:08 (duration: 14h 53m 34s)

  257 succeeded  

  0 cached  

  0 ignored  

  1 failed  

Nextflow command

nextflow run nf-core/rnaseq -profile singularity -c test.config --reads '/scratch/cgsb/gencore/out/Gresham/2020-08-03_HKMLKDRXX/1/inames/*_R{1,2}*.fastq.gz' --fasta /scratch/work/cgsb/genomes/Public/Vertebrate_mammalian/Homo_sapiens/Ensembl/GRCh38.p10/Homo_sapiens.GRCh38.dna.toplevel.fa --gtf /scratch/work/cgsb/genomes/Public/Vertebrate_mammalian/Homo_sapiens/Ensembl/GRCh38.p10/Homo_sapiens.GRCh38.88.gtf --outdir real-test-human-1-full --saveReference

CPU-Hours

1'381.4 (0.1% failed)

Launch directory

/scratch/mk5636/rnaseq-testing

Work directory

/scratch/mk5636/rnaseq-testing/work

Project directory

~/.nextflow/assets/nf-core/rnaseq

Script name

main.nf

Script ID

efd50c97fd77bdc6b6161e3ee76f7ddd

Workflow session

e90dff76-cd0c-4bb6-abca-f8b718bbcd5a

Workflow repository

https://github.com/nf-core/rnaseq, revision master (commit hash 3b6df9bd104927298fcdf69e97cca7ff1f80527c)

Workflow profile

singularity

Workflow container

nfcore/rnaseq:1.4.2

Container engine

singularity

Nextflow version

version 20.09.1-edge, build 5428 (15-10-2020 09:20 UTC)