FastQCFastQC Report
Mon 10 Jul 2023
HMGL2DRX2_l02_n01_RL1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMGL2DRX2_l02_n01_RL1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46747403
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC920280.1968622727555582TruSeq Adapter, Index 2 (100% over 50bp)
GTCCTTTCGTACTAAAATATCATAATTTTTTAAAGATAGAAACCAACCTG725810.155262100870074No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCGCGTATGC623110.13329296602850857TruSeq Adapter, Index 2 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)