FastQCFastQC Report
Mon 10 Jul 2023
HMGL2DRX2_l01.2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMGL2DRX2_l01.2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460584363
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCG37496827381.41142060439425No Hit
GGGGGG8045723617.46851227773879No Hit
TGGGGG13757230.298690774267558No Hit
TTCTGG7174080.15576038998093383No Hit
TTCGGG6577590.14280966807377263No Hit
TTGGGG6098510.13240809914339188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)