[2023-07-10 18:45:31,083] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2023-07-10 18:45:31,083] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2023-07-10 18:45:31,083] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2023-07-10 18:45:31,086] multiqc [DEBUG ] Loading config settings from: /home/mk5636/nf-hpcpipe/test_new/bin/mqc_config.yaml
[2023-07-10 18:45:31,086] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}}
[2023-07-10 18:45:31,086] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/mk5636/nf-hpcpipe/test_new/bin/mqc_config.yaml .
[2023-07-10 18:45:31,325] multiqc [WARNING] MultiQC Version v1.14 now available!
[2023-07-10 18:45:31,325] multiqc [INFO ] This is MultiQC v1.9
[2023-07-10 18:45:31,325] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/mk5636/nf-hpcpipe/test_new/bin/mqc_config.yaml .
[2023-07-10 18:45:31,325] multiqc [DEBUG ] Working dir : /scratch/mk5636/nf-pipeline-test/work/19/55eba2837081ab06dcd8fb018e9db8/merged
[2023-07-10 18:45:31,325] multiqc [INFO ] Template : default
[2023-07-10 18:45:31,325] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2023-07-10 18:45:31,325] multiqc [INFO ] Searching : /scratch/mk5636/nf-pipeline-test/work/19/55eba2837081ab06dcd8fb018e9db8/merged
[2023-07-10 18:45:31,325] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2023-07-10 18:45:31,326] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-35290036/tmppy5h3ql9
[2023-07-10 18:45:31,438] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: ./multiqc_data
[2023-07-10 18:45:31,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN114_hs_fastqc.html
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[2023-07-10 18:45:31,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN108_hs_fastqc.html
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[2023-07-10 18:45:31,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html
[2023-07-10 18:45:31,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN128_hs_fastqc.html
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[2023-07-10 18:45:31,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN115_hs_fastqc.html
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[2023-07-10 18:45:32,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN145_hs_fastqc.html
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[2023-07-10 18:45:32,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN148_hs_fastqc.html
[2023-07-10 18:45:32,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN148_hs_fastqc.html
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[2023-07-10 18:45:32,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN114_hs_fastqc.html
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[2023-07-10 18:45:32,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN148_hs_fastqc.html
[2023-07-10 18:45:32,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN148_hs_fastqc.html
[2023-07-10 18:45:32,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN127_hs_fastqc.html
[2023-07-10 18:45:32,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN127_hs_fastqc.html
[2023-07-10 18:45:32,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN131_hs_fastqc.html
[2023-07-10 18:45:32,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN131_hs_fastqc.html
[2023-07-10 18:45:32,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN153_hs_fastqc.html
[2023-07-10 18:45:32,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN153_hs_fastqc.html
[2023-07-10 18:45:32,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN130_hs_fastqc.html
[2023-07-10 18:45:32,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN130_hs_fastqc.html
[2023-07-10 18:45:32,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN137_hs_fastqc.html
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[2023-07-10 18:45:32,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN110_hs_fastqc.html
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[2023-07-10 18:45:32,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN117_hs_fastqc.html
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[2023-07-10 18:45:32,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN119_hs_fastqc.html
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[2023-07-10 18:45:32,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN142_hs_fastqc.html
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[2023-07-10 18:45:32,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN138_hs_fastqc.html
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[2023-07-10 18:45:32,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN129_hs_fastqc.html
[2023-07-10 18:45:32,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN129_hs_fastqc.html
[2023-07-10 18:45:32,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_undetermined_fastqc.html
[2023-07-10 18:45:32,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_undetermined_fastqc.html
[2023-07-10 18:45:32,997] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN108_hs_fastqc.html
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[2023-07-10 18:45:33,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN118_hs_fastqc.html
[2023-07-10 18:45:33,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN132_hs_fastqc.html
[2023-07-10 18:45:33,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN132_hs_fastqc.html
[2023-07-10 18:45:34,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN155_hs_fastqc.html
[2023-07-10 18:45:34,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN155_hs_fastqc.html
[2023-07-10 18:45:34,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN123_hs_fastqc.html
[2023-07-10 18:45:34,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN123_hs_fastqc.html
[2023-07-10 18:45:34,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN111_hs_fastqc.html
[2023-07-10 18:45:34,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN111_hs_fastqc.html
[2023-07-10 18:45:34,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN143_hs_fastqc.html
[2023-07-10 18:45:34,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN143_hs_fastqc.html
[2023-07-10 18:45:34,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN121_hs_fastqc.html
[2023-07-10 18:45:34,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN121_hs_fastqc.html
[2023-07-10 18:45:34,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN139_hs_fastqc.html
[2023-07-10 18:45:34,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN139_hs_fastqc.html
[2023-07-10 18:45:34,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN124_hs_fastqc.html
[2023-07-10 18:45:34,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN124_hs_fastqc.html
[2023-07-10 18:45:34,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN129_hs_fastqc.html
[2023-07-10 18:45:34,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN129_hs_fastqc.html
[2023-07-10 18:45:34,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN152_hs_fastqc.html
[2023-07-10 18:45:34,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN152_hs_fastqc.html
[2023-07-10 18:45:34,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN137_hs_fastqc.html
[2023-07-10 18:45:34,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN137_hs_fastqc.html
[2023-07-10 18:45:34,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN113_hs_fastqc.html
[2023-07-10 18:45:34,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN113_hs_fastqc.html
[2023-07-10 18:45:34,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN144_hs_fastqc.html
[2023-07-10 18:45:34,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN144_hs_fastqc.html
[2023-07-10 18:45:34,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN126_hs_fastqc.html
[2023-07-10 18:45:34,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN126_hs_fastqc.html
[2023-07-10 18:45:34,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN125_hs_fastqc.html
[2023-07-10 18:45:34,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN125_hs_fastqc.html
[2023-07-10 18:45:34,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN132_hs_fastqc.html
[2023-07-10 18:45:34,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN132_hs_fastqc.html
[2023-07-10 18:45:34,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN112_hs_fastqc.html
[2023-07-10 18:45:34,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN112_hs_fastqc.html
[2023-07-10 18:45:34,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN122_hs_fastqc.html
[2023-07-10 18:45:34,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN122_hs_fastqc.html
[2023-07-10 18:45:34,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN122_hs_fastqc.html
[2023-07-10 18:45:34,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN122_hs_fastqc.html
[2023-07-10 18:45:34,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN109_hs_fastqc.html
[2023-07-10 18:45:34,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN109_hs_fastqc.html
[2023-07-10 18:45:34,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN113_hs_fastqc.html
[2023-07-10 18:45:34,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN113_hs_fastqc.html
[2023-07-10 18:45:34,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN109_hs_fastqc.html
[2023-07-10 18:45:34,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN109_hs_fastqc.html
[2023-07-10 18:45:34,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN133_hs_fastqc.html
[2023-07-10 18:45:34,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN133_hs_fastqc.html
[2023-07-10 18:45:34,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN112_hs_fastqc.html
[2023-07-10 18:45:34,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN112_hs_fastqc.html
[2023-07-10 18:45:34,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN144_hs_fastqc.html
[2023-07-10 18:45:34,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN144_hs_fastqc.html
[2023-07-10 18:45:35,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN135_hs_fastqc.html
[2023-07-10 18:45:35,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN135_hs_fastqc.html
[2023-07-10 18:45:35,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN146_hs_fastqc.html
[2023-07-10 18:45:35,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN146_hs_fastqc.html
[2023-07-10 18:45:35,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN140_hs_fastqc.html
[2023-07-10 18:45:35,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN140_hs_fastqc.html
[2023-07-10 18:45:35,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN118_hs_fastqc.html
[2023-07-10 18:45:35,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN118_hs_fastqc.html
[2023-07-10 18:45:35,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN139_hs_fastqc.html
[2023-07-10 18:45:35,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN139_hs_fastqc.html
[2023-07-10 18:45:35,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN151_hs_fastqc.html
[2023-07-10 18:45:35,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN151_hs_fastqc.html
[2023-07-10 18:45:35,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN119_hs_fastqc.html
[2023-07-10 18:45:35,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN119_hs_fastqc.html
[2023-07-10 18:45:35,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN150_hs_fastqc.html
[2023-07-10 18:45:35,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN150_hs_fastqc.html
[2023-07-10 18:45:35,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN155_hs_fastqc.html
[2023-07-10 18:45:35,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN155_hs_fastqc.html
[2023-07-10 18:45:35,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN121_hs_fastqc.html
[2023-07-10 18:45:35,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN121_hs_fastqc.html
[2023-07-10 18:45:35,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN154_hs_fastqc.html
[2023-07-10 18:45:35,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n01_EN154_hs_fastqc.html
[2023-07-10 18:45:35,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN147_hs_fastqc.html
[2023-07-10 18:45:35,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN147_hs_fastqc.html
[2023-07-10 18:45:35,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN123_hs_fastqc.html
[2023-07-10 18:45:35,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN123_hs_fastqc.html
[2023-07-10 18:45:35,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN126_hs_fastqc.html
[2023-07-10 18:45:35,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHWYGAFX5_n02_EN126_hs_fastqc.html
[2023-07-10 18:45:36,190] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2023-07-10 18:45:36,192] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2023-07-10 18:45:36,200] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2023-07-10 18:45:36,222] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 49 samples (table)
[2023-07-10 18:45:36,232] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2023-07-10 18:45:36,240] multiqc [DEBUG ] No samples found: conpair
[2023-07-10 18:45:36,246] multiqc [DEBUG ] No samples found: peddy
[2023-07-10 18:45:36,252] multiqc [DEBUG ] No samples found: somalier
[2023-07-10 18:45:36,257] multiqc [DEBUG ] No samples found: methylQA
[2023-07-10 18:45:36,264] multiqc [DEBUG ] No samples found: mosdepth
[2023-07-10 18:45:36,269] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2023-07-10 18:45:36,273] multiqc [DEBUG ] No samples found: qualimap
[2023-07-10 18:45:36,277] multiqc [DEBUG ] No samples found: preseq
[2023-07-10 18:45:36,282] multiqc [DEBUG ] No samples found: quast
[2023-07-10 18:45:36,286] multiqc [DEBUG ] No samples found: qorts
[2023-07-10 18:45:36,290] multiqc [DEBUG ] No samples found: rna_seqc
[2023-07-10 18:45:36,295] multiqc [DEBUG ] No samples found: rockhopper
[2023-07-10 18:45:36,299] multiqc [DEBUG ] No samples found: rsem
[2023-07-10 18:45:36,310] multiqc [DEBUG ] No samples found: rseqc
[2023-07-10 18:45:36,315] multiqc [DEBUG ] No samples found: busco
[2023-07-10 18:45:36,319] multiqc [DEBUG ] No samples found: goleft_indexcov
[2023-07-10 18:45:36,324] multiqc [DEBUG ] No samples found: disambiguate
[2023-07-10 18:45:36,328] multiqc [DEBUG ] No samples found: supernova
[2023-07-10 18:45:36,345] multiqc [DEBUG ] No samples found: deeptools
[2023-07-10 18:45:36,349] multiqc [DEBUG ] No samples found: sargasso
[2023-07-10 18:45:36,355] multiqc [DEBUG ] No samples found: verifybamid
[2023-07-10 18:45:36,359] multiqc [DEBUG ] No samples found: mirtrace
[2023-07-10 18:45:36,363] multiqc [DEBUG ] No samples found: happy
[2023-07-10 18:45:36,368] multiqc [DEBUG ] No samples found: mirtop
[2023-07-10 18:45:36,374] multiqc [DEBUG ] No samples found: homer
[2023-07-10 18:45:36,380] multiqc [DEBUG ] No samples found: macs2
[2023-07-10 18:45:36,384] multiqc [DEBUG ] No samples found: theta2
[2023-07-10 18:45:36,388] multiqc [DEBUG ] No samples found: snpeff
[2023-07-10 18:45:36,394] multiqc [DEBUG ] No samples found: gatk
[2023-07-10 18:45:36,398] multiqc [DEBUG ] No samples found: htseq
[2023-07-10 18:45:36,403] multiqc [DEBUG ] No samples found: bcftools
[2023-07-10 18:45:36,407] multiqc [DEBUG ] No samples found: featureCounts
[2023-07-10 18:45:36,412] multiqc [DEBUG ] No samples found: fgbio
[2023-07-10 18:45:36,424] multiqc [DEBUG ] No samples found: dragen
[2023-07-10 18:45:36,428] multiqc [DEBUG ] No samples found: dedup
[2023-07-10 18:45:36,432] multiqc [DEBUG ] No samples found: damageprofiler
[2023-07-10 18:45:36,451] multiqc [DEBUG ] No samples found: biobambam2
[2023-07-10 18:45:36,455] multiqc [DEBUG ] No samples found: mtnucratio
[2023-07-10 18:45:36,457] multiqc [DEBUG ] No samples found: picard
[2023-07-10 18:45:36,461] multiqc [DEBUG ] No samples found: prokka
[2023-07-10 18:45:36,465] multiqc [DEBUG ] No samples found: samblaster
[2023-07-10 18:45:36,472] multiqc [DEBUG ] No samples found: samtools
[2023-07-10 18:45:36,477] multiqc [DEBUG ] No samples found: sexdeterrmine
[2023-07-10 18:45:36,481] multiqc [DEBUG ] No samples found: bamtools
[2023-07-10 18:45:36,485] multiqc [DEBUG ] No samples found: jellyfish
[2023-07-10 18:45:36,491] multiqc [DEBUG ] No samples found: vcftools
[2023-07-10 18:45:36,496] multiqc [DEBUG ] No samples found: longranger
[2023-07-10 18:45:36,502] multiqc [DEBUG ] No samples found: stacks
[2023-07-10 18:45:36,506] multiqc [DEBUG ] No samples found: varscan2
[2023-07-10 18:45:36,520] multiqc [DEBUG ] No samples found: bbmap
[2023-07-10 18:45:36,524] multiqc [DEBUG ] No samples found: bismark
[2023-07-10 18:45:36,528] multiqc [DEBUG ] No samples found: biscuit
[2023-07-10 18:45:36,533] multiqc [DEBUG ] No samples found: hicexplorer
[2023-07-10 18:45:36,537] multiqc [DEBUG ] No samples found: hicup
[2023-07-10 18:45:36,541] multiqc [DEBUG ] No samples found: hicpro
[2023-07-10 18:45:36,545] multiqc [DEBUG ] No samples found: salmon
[2023-07-10 18:45:36,549] multiqc [DEBUG ] No samples found: kallisto
[2023-07-10 18:45:36,553] multiqc [DEBUG ] No samples found: slamdunk
[2023-07-10 18:45:36,557] multiqc [DEBUG ] No samples found: star
[2023-07-10 18:45:36,562] multiqc [DEBUG ] No samples found: hisat2
[2023-07-10 18:45:36,566] multiqc [DEBUG ] No samples found: tophat
[2023-07-10 18:45:36,570] multiqc [DEBUG ] No samples found: bowtie2
[2023-07-10 18:45:36,574] multiqc [DEBUG ] No samples found: bowtie1
[2023-07-10 18:45:36,579] multiqc [DEBUG ] No samples found: snpsplit
[2023-07-10 18:45:36,583] multiqc [DEBUG ] No samples found: kat
[2023-07-10 18:45:36,586] multiqc [DEBUG ] No samples found: leehom
[2023-07-10 18:45:36,591] multiqc [DEBUG ] No samples found: adapterRemoval
[2023-07-10 18:45:36,595] multiqc [DEBUG ] No samples found: clipandmerge
[2023-07-10 18:45:36,599] multiqc [DEBUG ] No samples found: cutadapt
[2023-07-10 18:45:36,603] multiqc [DEBUG ] No samples found: flexbar
[2023-07-10 18:45:36,607] multiqc [DEBUG ] No samples found: kaiju
[2023-07-10 18:45:36,611] multiqc [DEBUG ] No samples found: kraken
[2023-07-10 18:45:36,615] multiqc [DEBUG ] No samples found: malt
[2023-07-10 18:45:36,620] multiqc [DEBUG ] No samples found: trimmomatic
[2023-07-10 18:45:36,624] multiqc [DEBUG ] No samples found: sickle
[2023-07-10 18:45:36,628] multiqc [DEBUG ] No samples found: skewer
[2023-07-10 18:45:36,632] multiqc [DEBUG ] No samples found: sortmerna
[2023-07-10 18:45:36,636] multiqc [DEBUG ] No samples found: biobloomtools
[2023-07-10 18:45:36,640] multiqc [DEBUG ] No samples found: fastq_screen
[2023-07-10 18:45:36,646] multiqc [DEBUG ] No samples found: afterqc
[2023-07-10 18:45:36,650] multiqc [DEBUG ] No samples found: fastp
[2023-07-10 18:45:39,042] multiqc.modules.fastqc.fastqc [INFO ] Found 98 reports
[2023-07-10 18:45:40,961] multiqc [DEBUG ] No samples found: pycoqc
[2023-07-10 18:45:40,966] multiqc [DEBUG ] No samples found: minionqc
[2023-07-10 18:45:40,971] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2023-07-10 18:45:40,982] multiqc [DEBUG ] No samples found: clusterflow
[2023-07-10 18:45:40,987] multiqc [DEBUG ] No samples found: bcl2fastq
[2023-07-10 18:45:40,991] multiqc [DEBUG ] No samples found: interop
[2023-07-10 18:45:40,996] multiqc [DEBUG ] No samples found: ivar
[2023-07-10 18:45:41,011] multiqc [DEBUG ] No samples found: flash
[2023-07-10 18:45:41,021] multiqc [DEBUG ] No samples found: seqyclean
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,021] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'.
[2023-07-10 18:45:41,022] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'.
[2023-07-10 18:45:41,136] multiqc [INFO ] Compressing plot data
[2023-07-10 18:45:42,801] multiqc [WARNING] Deleting : multiqc_report.html (-f was specified)
[2023-07-10 18:45:42,803] multiqc [WARNING] Deleting : multiqc_data (-f was specified)
[2023-07-10 18:45:42,812] multiqc [INFO ] Report : multiqc_report.html
[2023-07-10 18:45:42,812] multiqc [INFO ] Data : multiqc_data
[2023-07-10 18:45:42,812] multiqc [DEBUG ] Moving data file from '/state/partition1/job-35290036/tmppy5h3ql9/multiqc_data' to '/scratch/mk5636/nf-pipeline-test/work/19/55eba2837081ab06dcd8fb018e9db8/merged/multiqc_data'
[2023-07-10 18:45:42,929] multiqc [INFO ] MultiQC complete