FastQCFastQC Report
Mon 16 Sep 2024
HFHGFDRX5_n01_YTW272_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHFHGFDRX5_n01_YTW272_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19843856
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTATC1683954784.86025599056958No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGATCGGA2206621.1119915403538505No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTAAG2047951.0320322824354298No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTAGA1863130.9388951421538233No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACAGAT1758540.8861886520442399No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATAGATCGGAAGAGCAC1540980.7765527022570613No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGAAGATC1460480.7359859898197205No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGAGATCG1411180.7111420280413242No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTAGATCGGAAGAG1144300.5766520377894296No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAAGATCGG872460.4396625333302156No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTATA822000.41423400774526886No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACAGATCGGAAG597210.3009546128534696No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTAGATCGGAAGAGC594130.29940249516021483No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTAGATCGGAAGAGCA567500.2859827243253529No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGAGATCGGAA511950.25798917307200775No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTAAGATCGGAAGA309520.1559777494857854No Hit
GTCGTAAGCAATATTTCAAGATGCATGCGTCAATTTTACGCAGACTATCT227860.11482647324189413No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCAGACTACC219760.11074460528236044No Hit
GTCGTAAGCAATATTTCAAGAATGCATGCGTCAATTTTACGCGGACTATC212170.1069197438239826No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)