[2024-09-03 17:39:26,446] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-09-03 17:39:26,447] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-09-03 17:39:26,447] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-09-03 17:39:26,451] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW_1/bin/mqc_config.yaml [2024-09-03 17:39:26,451] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-09-03 17:39:26,452] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW_1/bin/mqc_config.yaml . [2024-09-03 17:39:26,490] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-09-03 17:39:26,490] multiqc [INFO ] This is MultiQC v1.9 [2024-09-03 17:39:26,490] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW_1/bin/mqc_config.yaml . [2024-09-03 17:39:26,490] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/12/fb81a37e7e8d9c5d4521c38428e773/merged [2024-09-03 17:39:26,490] multiqc [INFO ] Template : default [2024-09-03 17:39:26,490] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-09-03 17:39:26,490] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/12/fb81a37e7e8d9c5d4521c38428e773/merged [2024-09-03 17:39:26,491] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-09-03 17:39:26,491] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-50635745/tmpex8iigbp [2024-09-03 17:39:26,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3448_3_fastqc.html [2024-09-03 17:39:26,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3448_3_fastqc.html [2024-09-03 17:39:26,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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filesize limit: HFHGFDRX5_n02_3299_3_fastqc.html [2024-09-03 17:39:36,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3297_3_fastqc.html [2024-09-03 17:39:36,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3297_3_fastqc.html [2024-09-03 17:39:36,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3266_3_fastqc.html [2024-09-03 17:39:36,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3266_3_fastqc.html [2024-09-03 17:39:36,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3300_1_3_fastqc.html [2024-09-03 17:39:36,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2024-09-03 17:39:36,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3266_3_fastqc.html [2024-09-03 17:39:36,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3266_3_fastqc.html [2024-09-03 17:39:36,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3271_3_fastqc.html [2024-09-03 17:39:36,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3271_3_fastqc.html [2024-09-03 17:39:36,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3450_3_fastqc.html [2024-09-03 17:39:36,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3450_3_fastqc.html [2024-09-03 17:39:36,925] multiqc [DEBUG 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exceeded search pattern filesize limit: HFHGFDRX5_n02_3431_3_fastqc.html [2024-09-03 17:39:37,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3431_3_fastqc.html [2024-09-03 17:39:37,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3455_3_fastqc.html [2024-09-03 17:39:37,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3455_3_fastqc.html [2024-09-03 17:39:37,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3435_3_fastqc.html [2024-09-03 17:39:37,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3435_3_fastqc.html [2024-09-03 17:39:37,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3456_3_fastqc.html [2024-09-03 17:39:37,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3456_3_fastqc.html [2024-09-03 17:39:37,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3454_3_fastqc.html [2024-09-03 17:39:37,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3454_3_fastqc.html [2024-09-03 17:39:37,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3277_3_fastqc.html [2024-09-03 17:39:37,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3277_3_fastqc.html [2024-09-03 17:39:37,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3414_3_fastqc.html [2024-09-03 17:39:37,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3414_3_fastqc.html [2024-09-03 17:39:37,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3458_3_fastqc.html [2024-09-03 17:39:37,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3458_3_fastqc.html [2024-09-03 17:39:37,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3413_3_fastqc.html [2024-09-03 17:39:37,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3413_3_fastqc.html [2024-09-03 17:39:37,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3300_3_fastqc.html [2024-09-03 17:39:37,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3300_3_fastqc.html [2024-09-03 17:39:37,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3421_3_fastqc.html [2024-09-03 17:39:37,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3421_3_fastqc.html [2024-09-03 17:39:37,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3426_3_fastqc.html [2024-09-03 17:39:37,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3426_3_fastqc.html [2024-09-03 17:39:37,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3301_3_fastqc.html [2024-09-03 17:39:37,907] multiqc [DEBUG ] File ignored by longranger/invocation 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filesize limit: HFHGFDRX5_n01_3418_3_fastqc.html [2024-09-03 17:39:38,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW274_3_fastqc.html [2024-09-03 17:39:38,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_YTW274_3_fastqc.html [2024-09-03 17:39:38,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3411_3_fastqc.html [2024-09-03 17:39:38,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3411_3_fastqc.html [2024-09-03 17:39:38,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3309_3_fastqc.html [2024-09-03 17:39:38,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3309_3_fastqc.html [2024-09-03 17:39:38,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3424_3_fastqc.html [2024-09-03 17:39:38,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3424_3_fastqc.html [2024-09-03 17:39:38,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_YTW272_3_fastqc.html [2024-09-03 17:39:38,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_YTW272_3_fastqc.html [2024-09-03 17:39:38,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_undetermined_fastqc.html [2024-09-03 17:39:38,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_undetermined_fastqc.html [2024-09-03 17:39:38,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_YTW274_3_fastqc.html [2024-09-03 17:39:38,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_YTW274_3_fastqc.html [2024-09-03 17:39:38,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3452_3_fastqc.html [2024-09-03 17:39:38,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3452_3_fastqc.html [2024-09-03 17:39:38,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3294_3_fastqc.html [2024-09-03 17:39:38,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3294_3_fastqc.html [2024-09-03 17:39:38,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3457_3_fastqc.html [2024-09-03 17:39:38,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3457_3_fastqc.html [2024-09-03 17:39:38,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3298_3_fastqc.html [2024-09-03 17:39:38,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3298_3_fastqc.html [2024-09-03 17:39:38,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3288_3_fastqc.html [2024-09-03 17:39:38,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3288_3_fastqc.html [2024-09-03 17:39:39,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3437_3_fastqc.html [2024-09-03 17:39:39,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3437_3_fastqc.html [2024-09-03 17:39:39,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3275_3_fastqc.html [2024-09-03 17:39:39,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3275_3_fastqc.html [2024-09-03 17:39:39,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3451_3_fastqc.html [2024-09-03 17:39:39,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3451_3_fastqc.html [2024-09-03 17:39:39,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3434_3_fastqc.html [2024-09-03 17:39:39,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3434_3_fastqc.html [2024-09-03 17:39:39,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3295_3_fastqc.html [2024-09-03 17:39:39,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3295_3_fastqc.html [2024-09-03 17:39:39,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3269_3_fastqc.html [2024-09-03 17:39:39,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3269_3_fastqc.html [2024-09-03 17:39:39,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3260_3_fastqc.html [2024-09-03 17:39:39,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3260_3_fastqc.html [2024-09-03 17:39:39,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3271_3_fastqc.html [2024-09-03 17:39:39,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3271_3_fastqc.html [2024-09-03 17:39:39,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3437_3_fastqc.html [2024-09-03 17:39:39,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3437_3_fastqc.html [2024-09-03 17:39:39,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3446_3_fastqc.html [2024-09-03 17:39:39,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n01_3446_3_fastqc.html [2024-09-03 17:39:39,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3259_3_fastqc.html [2024-09-03 17:39:39,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HFHGFDRX5_n02_3259_3_fastqc.html [2024-09-03 17:39:40,277] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-09-03 17:39:40,280] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-09-03 17:39:40,299] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-09-03 17:39:40,302] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-09-03 17:39:40,345] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 93 samples (table) [2024-09-03 17:39:40,352] multiqc [DEBUG ] No samples found: conpair [2024-09-03 17:39:40,359] multiqc [DEBUG ] No samples found: peddy [2024-09-03 17:39:40,366] multiqc [DEBUG ] No samples found: somalier [2024-09-03 17:39:40,373] multiqc [DEBUG ] No samples found: methylQA [2024-09-03 17:39:40,385] multiqc [DEBUG ] No samples found: mosdepth [2024-09-03 17:39:40,392] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-09-03 17:39:40,396] multiqc [DEBUG ] No samples found: qualimap [2024-09-03 17:39:40,402] multiqc [DEBUG ] No samples found: preseq [2024-09-03 17:39:40,409] multiqc [DEBUG ] No samples found: quast [2024-09-03 17:39:40,416] multiqc [DEBUG ] No samples found: qorts [2024-09-03 17:39:40,423] multiqc [DEBUG ] No samples found: rna_seqc [2024-09-03 17:39:40,429] multiqc [DEBUG ] No samples found: rockhopper [2024-09-03 17:39:40,436] multiqc [DEBUG ] No samples found: rsem [2024-09-03 17:39:40,453] multiqc [DEBUG ] No samples found: rseqc [2024-09-03 17:39:40,459] multiqc [DEBUG ] No samples found: busco [2024-09-03 17:39:40,467] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-09-03 17:39:40,474] multiqc [DEBUG ] No samples found: disambiguate [2024-09-03 17:39:40,483] multiqc [DEBUG ] No samples found: supernova [2024-09-03 17:39:40,505] multiqc [DEBUG ] No samples found: deeptools [2024-09-03 17:39:40,512] multiqc [DEBUG ] No samples found: sargasso [2024-09-03 17:39:40,520] multiqc [DEBUG ] No samples found: verifybamid [2024-09-03 17:39:40,527] multiqc [DEBUG ] No samples found: mirtrace [2024-09-03 17:39:40,533] multiqc [DEBUG ] No samples found: happy [2024-09-03 17:39:40,540] multiqc [DEBUG ] No samples found: mirtop [2024-09-03 17:39:40,549] multiqc [DEBUG ] No samples found: homer [2024-09-03 17:39:40,556] multiqc [DEBUG ] No samples found: macs2 [2024-09-03 17:39:40,562] multiqc [DEBUG ] No samples found: theta2 [2024-09-03 17:39:40,569] multiqc [DEBUG ] No samples found: snpeff [2024-09-03 17:39:40,579] multiqc [DEBUG ] No samples found: gatk [2024-09-03 17:39:40,585] multiqc [DEBUG ] No samples found: htseq [2024-09-03 17:39:40,592] multiqc [DEBUG ] No samples found: bcftools [2024-09-03 17:39:40,598] multiqc [DEBUG ] No samples found: featureCounts [2024-09-03 17:39:40,608] multiqc [DEBUG ] No samples found: fgbio [2024-09-03 17:39:40,625] multiqc [DEBUG ] No samples found: dragen [2024-09-03 17:39:40,632] multiqc [DEBUG ] No samples found: dedup [2024-09-03 17:39:40,638] multiqc [DEBUG ] No samples found: damageprofiler [2024-09-03 17:39:40,672] multiqc [DEBUG ] No samples found: biobambam2 [2024-09-03 17:39:40,678] multiqc [DEBUG ] No samples found: mtnucratio [2024-09-03 17:39:40,680] multiqc [DEBUG ] No samples found: picard [2024-09-03 17:39:40,689] multiqc [DEBUG ] No samples found: prokka [2024-09-03 17:39:40,695] multiqc [DEBUG ] No samples found: samblaster [2024-09-03 17:39:40,707] multiqc [DEBUG ] No samples found: samtools [2024-09-03 17:39:40,714] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-09-03 17:39:40,722] multiqc [DEBUG ] No samples found: bamtools [2024-09-03 17:39:40,728] multiqc [DEBUG ] No samples found: jellyfish [2024-09-03 17:39:40,739] multiqc [DEBUG ] No samples found: vcftools [2024-09-03 17:39:40,746] multiqc [DEBUG ] No samples found: longranger [2024-09-03 17:39:40,753] multiqc [DEBUG ] No samples found: stacks [2024-09-03 17:39:40,760] multiqc [DEBUG ] No samples found: varscan2 [2024-09-03 17:39:40,785] multiqc [DEBUG ] No samples found: bbmap [2024-09-03 17:39:40,791] multiqc [DEBUG ] No samples found: bismark [2024-09-03 17:39:40,798] multiqc [DEBUG ] No samples found: biscuit [2024-09-03 17:39:40,806] multiqc [DEBUG ] No samples found: hicexplorer [2024-09-03 17:39:40,813] multiqc [DEBUG ] No samples found: hicup [2024-09-03 17:39:40,820] multiqc [DEBUG ] No samples found: hicpro [2024-09-03 17:39:40,826] multiqc [DEBUG ] No samples found: salmon [2024-09-03 17:39:40,833] multiqc [DEBUG ] No samples found: kallisto [2024-09-03 17:39:40,841] multiqc [DEBUG ] No samples found: slamdunk [2024-09-03 17:39:40,847] multiqc [DEBUG ] No samples found: star [2024-09-03 17:39:40,853] multiqc [DEBUG ] No samples found: hisat2 [2024-09-03 17:39:40,860] multiqc [DEBUG ] No samples found: tophat [2024-09-03 17:39:40,866] multiqc [DEBUG ] No samples found: bowtie2 [2024-09-03 17:39:40,873] multiqc [DEBUG ] No samples found: bowtie1 [2024-09-03 17:39:40,880] multiqc [DEBUG ] No samples found: snpsplit [2024-09-03 17:39:40,886] multiqc [DEBUG ] No samples found: kat [2024-09-03 17:39:40,893] multiqc [DEBUG ] No samples found: leehom [2024-09-03 17:39:40,900] multiqc [DEBUG ] No samples found: adapterRemoval [2024-09-03 17:39:40,907] multiqc [DEBUG ] No samples found: clipandmerge [2024-09-03 17:39:40,914] multiqc [DEBUG ] No samples found: cutadapt [2024-09-03 17:39:40,921] multiqc [DEBUG ] No samples found: flexbar [2024-09-03 17:39:40,927] multiqc [DEBUG ] No samples found: kaiju [2024-09-03 17:39:40,934] multiqc [DEBUG ] No samples found: kraken [2024-09-03 17:39:40,941] multiqc [DEBUG ] No samples found: malt [2024-09-03 17:39:40,947] multiqc [DEBUG ] No samples found: trimmomatic [2024-09-03 17:39:40,954] multiqc [DEBUG ] No samples found: sickle [2024-09-03 17:39:40,961] multiqc [DEBUG ] No samples found: skewer [2024-09-03 17:39:40,967] multiqc [DEBUG ] No samples found: sortmerna [2024-09-03 17:39:40,974] multiqc [DEBUG ] No samples found: biobloomtools [2024-09-03 17:39:40,981] multiqc [DEBUG ] No samples found: fastq_screen [2024-09-03 17:39:40,988] multiqc [DEBUG ] No samples found: afterqc [2024-09-03 17:39:40,995] multiqc [DEBUG ] No samples found: fastp [2024-09-03 17:39:51,285] multiqc.modules.fastqc.fastqc [INFO ] Found 186 reports [2024-09-03 17:40:09,945] multiqc [DEBUG ] No samples found: pycoqc [2024-09-03 17:40:09,952] multiqc [DEBUG ] No samples found: minionqc [2024-09-03 17:40:09,959] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-09-03 17:40:09,966] multiqc [DEBUG ] No samples found: clusterflow [2024-09-03 17:40:09,972] multiqc [DEBUG ] No samples found: bcl2fastq [2024-09-03 17:40:09,980] multiqc [DEBUG ] No samples found: interop [2024-09-03 17:40:09,986] multiqc [DEBUG ] No samples found: ivar [2024-09-03 17:40:09,993] multiqc [DEBUG ] No samples found: flash [2024-09-03 17:40:10,000] multiqc [DEBUG ] No samples found: seqyclean [2024-09-03 17:40:10,000] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-09-03 17:40:10,000] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-09-03 17:40:10,000] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-09-03 17:40:10,001] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-09-03 17:40:10,220] multiqc [INFO ] Compressing plot data [2024-09-03 17:40:10,288] multiqc [INFO ] Report : multiqc_report.html [2024-09-03 17:40:10,288] multiqc [INFO ] Data : multiqc_data [2024-09-03 17:40:10,288] multiqc [DEBUG ] Moving data file from '/state/partition1/job-50635745/tmpex8iigbp/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/12/fb81a37e7e8d9c5d4521c38428e773/merged/multiqc_data' [2024-09-03 17:40:10,459] multiqc [INFO ] MultiQC complete