[2023-11-08 04:49:57,085] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-11-08 04:49:57,085] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-11-08 04:49:57,085] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-08 04:49:57,088] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-11-08 04:49:57,088] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-11-08 04:49:57,088] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-11-08 04:49:57,443] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-08 04:49:57,443] multiqc [INFO ] This is MultiQC v1.9 [2023-11-08 04:49:57,443] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-11-08 04:49:57,443] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/91/828783520f14acf0d5e0537e9ec352/merged [2023-11-08 04:49:57,443] multiqc [INFO ] Template : default [2023-11-08 04:49:57,443] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-11-08 04:49:57,443] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/91/828783520f14acf0d5e0537e9ec352/merged [2023-11-08 04:49:57,444] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-11-08 04:49:57,444] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-39765027/tmpnzcb819a [2023-11-08 04:49:57,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP10_ampCol-B_af1_fastqc.html [2023-11-08 04:49:57,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP10_ampCol-B_af1_fastqc.html [2023-11-08 04:49:57,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:05,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:05,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:05,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:05,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:05,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:05,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:05,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:05,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:05,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:05,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:05,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:05,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:05,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:05,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:05,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:05,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:05,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:05,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:05,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:06,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:06,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:06,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:06,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:06,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:06,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:06,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:06,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:06,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:06,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:06,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:06,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:06,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:06,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:06,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:06,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:06,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:06,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:06,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:06,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:06,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:06,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:06,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:06,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:06,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:06,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:07,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:07,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:07,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:07,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:07,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:07,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:07,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:07,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_LerAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:07,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:07,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af1_fastqc.html [2023-11-08 04:50:07,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:07,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:50:07,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:07,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:50:07,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:07,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:50:07,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:07,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:50:07,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:07,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:50:07,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:07,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:50:07,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:07,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:50:07,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_pIX-Halo_ampCol-B_af_fastqc.html [2023-11-08 04:50:07,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_pIX-Halo_ampCol-B_af_fastqc.html [2023-11-08 04:50:08,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_pIXHALO_ampFa-B_af_fastqc.html [2023-11-08 04:50:08,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_pIXHALO_ampFa-B_af_fastqc.html [2023-11-08 04:50:08,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_undetermined_fastqc.html [2023-11-08 04:50:08,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_undetermined_fastqc.html [2023-11-08 04:50:08,822] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-08 04:50:08,824] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-08 04:50:08,898] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 137 samples (table) [2023-11-08 04:50:08,900] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-11-08 04:50:08,909] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-11-08 04:50:08,916] multiqc [DEBUG ] No samples found: conpair [2023-11-08 04:50:08,922] multiqc [DEBUG ] No samples found: peddy [2023-11-08 04:50:08,929] multiqc [DEBUG ] No samples found: somalier [2023-11-08 04:50:08,935] multiqc [DEBUG ] No samples found: methylQA [2023-11-08 04:50:08,946] multiqc [DEBUG ] No samples found: mosdepth [2023-11-08 04:50:08,952] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-08 04:50:08,956] multiqc [DEBUG ] No samples found: qualimap [2023-11-08 04:50:08,962] multiqc [DEBUG ] No samples found: preseq [2023-11-08 04:50:08,969] multiqc [DEBUG ] No samples found: quast [2023-11-08 04:50:08,975] multiqc [DEBUG ] No samples found: qorts [2023-11-08 04:50:08,981] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-08 04:50:08,987] multiqc [DEBUG ] No samples found: rockhopper [2023-11-08 04:50:08,992] multiqc [DEBUG ] No samples found: rsem [2023-11-08 04:50:09,007] multiqc [DEBUG ] No samples found: rseqc [2023-11-08 04:50:09,013] multiqc [DEBUG ] No samples found: busco [2023-11-08 04:50:09,019] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-08 04:50:09,025] multiqc [DEBUG ] No samples found: disambiguate [2023-11-08 04:50:09,031] multiqc [DEBUG ] No samples found: supernova [2023-11-08 04:50:09,049] multiqc [DEBUG ] No samples found: deeptools [2023-11-08 04:50:09,055] multiqc [DEBUG ] No samples found: sargasso [2023-11-08 04:50:09,061] multiqc [DEBUG ] No samples found: verifybamid [2023-11-08 04:50:09,067] multiqc [DEBUG ] No samples found: mirtrace [2023-11-08 04:50:09,073] multiqc [DEBUG ] No samples found: happy [2023-11-08 04:50:09,079] multiqc [DEBUG ] No samples found: mirtop [2023-11-08 04:50:09,087] multiqc [DEBUG ] No samples found: homer [2023-11-08 04:50:09,093] multiqc [DEBUG ] No samples found: macs2 [2023-11-08 04:50:09,099] multiqc [DEBUG ] No samples found: theta2 [2023-11-08 04:50:09,105] multiqc [DEBUG ] No samples found: snpeff [2023-11-08 04:50:09,114] multiqc [DEBUG ] No samples found: gatk [2023-11-08 04:50:09,120] multiqc [DEBUG ] No samples found: htseq [2023-11-08 04:50:09,127] multiqc [DEBUG ] No samples found: bcftools [2023-11-08 04:50:09,133] multiqc [DEBUG ] No samples found: featureCounts [2023-11-08 04:50:09,141] multiqc [DEBUG ] No samples found: fgbio [2023-11-08 04:50:09,158] multiqc [DEBUG ] No samples found: dragen [2023-11-08 04:50:09,164] multiqc [DEBUG ] No samples found: dedup [2023-11-08 04:50:09,171] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-08 04:50:09,203] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-08 04:50:09,209] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-08 04:50:09,211] multiqc [DEBUG ] No samples found: picard [2023-11-08 04:50:09,217] multiqc [DEBUG ] No samples found: prokka [2023-11-08 04:50:09,223] multiqc [DEBUG ] No samples found: samblaster [2023-11-08 04:50:09,235] multiqc [DEBUG ] No samples found: samtools [2023-11-08 04:50:09,241] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-08 04:50:09,248] multiqc [DEBUG ] No samples found: bamtools [2023-11-08 04:50:09,253] multiqc [DEBUG ] No samples found: jellyfish [2023-11-08 04:50:09,263] multiqc [DEBUG ] No samples found: vcftools [2023-11-08 04:50:09,269] multiqc [DEBUG ] No samples found: longranger [2023-11-08 04:50:09,275] multiqc [DEBUG ] No samples found: stacks [2023-11-08 04:50:09,281] multiqc [DEBUG ] No samples found: varscan2 [2023-11-08 04:50:09,300] multiqc [DEBUG ] No samples found: bbmap [2023-11-08 04:50:09,307] multiqc [DEBUG ] No samples found: bismark [2023-11-08 04:50:09,313] multiqc [DEBUG ] No samples found: biscuit [2023-11-08 04:50:09,319] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-08 04:50:09,325] multiqc [DEBUG ] No samples found: hicup [2023-11-08 04:50:09,331] multiqc [DEBUG ] No samples found: hicpro [2023-11-08 04:50:09,336] multiqc [DEBUG ] No samples found: salmon [2023-11-08 04:50:09,342] multiqc [DEBUG ] No samples found: kallisto [2023-11-08 04:50:09,348] multiqc [DEBUG ] No samples found: slamdunk [2023-11-08 04:50:09,354] multiqc [DEBUG ] No samples found: star [2023-11-08 04:50:09,360] multiqc [DEBUG ] No samples found: hisat2 [2023-11-08 04:50:09,366] multiqc [DEBUG ] No samples found: tophat [2023-11-08 04:50:09,372] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-08 04:50:09,378] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-08 04:50:09,384] multiqc [DEBUG ] No samples found: snpsplit [2023-11-08 04:50:09,389] multiqc [DEBUG ] No samples found: kat [2023-11-08 04:50:09,395] multiqc [DEBUG ] No samples found: leehom [2023-11-08 04:50:09,400] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-08 04:50:09,406] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-08 04:50:09,412] multiqc [DEBUG ] No samples found: cutadapt [2023-11-08 04:50:09,418] multiqc [DEBUG ] No samples found: flexbar [2023-11-08 04:50:09,424] multiqc [DEBUG ] No samples found: kaiju [2023-11-08 04:50:09,430] multiqc [DEBUG ] No samples found: kraken [2023-11-08 04:50:09,436] multiqc [DEBUG ] No samples found: malt [2023-11-08 04:50:09,441] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-08 04:50:09,447] multiqc [DEBUG ] No samples found: sickle [2023-11-08 04:50:09,453] multiqc [DEBUG ] No samples found: skewer [2023-11-08 04:50:09,459] multiqc [DEBUG ] No samples found: sortmerna [2023-11-08 04:50:09,464] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-08 04:50:09,470] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-08 04:50:09,476] multiqc [DEBUG ] No samples found: afterqc [2023-11-08 04:50:09,482] multiqc [DEBUG ] No samples found: fastp [2023-11-08 04:50:19,601] multiqc.modules.fastqc.fastqc [INFO ] Found 137 reports [2023-11-08 04:50:48,951] multiqc [DEBUG ] No samples found: pycoqc [2023-11-08 04:50:48,958] multiqc [DEBUG ] No samples found: minionqc [2023-11-08 04:50:48,965] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-08 04:50:48,972] multiqc [DEBUG ] No samples found: clusterflow [2023-11-08 04:50:48,979] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-08 04:50:48,986] multiqc [DEBUG ] No samples found: interop [2023-11-08 04:50:48,993] multiqc [DEBUG ] No samples found: ivar [2023-11-08 04:50:49,000] multiqc [DEBUG ] No samples found: flash [2023-11-08 04:50:49,007] multiqc [DEBUG ] No samples found: seqyclean [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-11-08 04:50:49,007] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-11-08 04:50:49,008] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-11-08 04:50:49,165] multiqc [INFO ] Compressing plot data [2023-11-08 04:50:49,228] multiqc [INFO ] Report : multiqc_report.html [2023-11-08 04:50:49,228] multiqc [INFO ] Data : multiqc_data [2023-11-08 04:50:49,229] multiqc [DEBUG ] Moving data file from '/state/partition1/job-39765027/tmpnzcb819a/multiqc_data' to '/vast/gencore/GENEFLOW/work/91/828783520f14acf0d5e0537e9ec352/merged/multiqc_data' [2023-11-08 04:50:49,508] multiqc [INFO ] MultiQC complete