[2024-01-08 11:44:14,694] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-01-08 11:44:14,694] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-01-08 11:44:14,695] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-01-08 11:44:14,697] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-01-08 11:44:14,697] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-01-08 11:44:14,697] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-01-08 11:44:14,857] multiqc [WARNING] MultiQC Version v1.19 now available! [2024-01-08 11:44:14,858] multiqc [INFO ] This is MultiQC v1.9 [2024-01-08 11:44:14,858] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-01-08 11:44:14,858] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/2d/0e4bd44542a115d5734d4a1f85a024/merged [2024-01-08 11:44:14,858] multiqc [INFO ] Template : default [2024-01-08 11:44:14,858] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-01-08 11:44:14,858] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/2d/0e4bd44542a115d5734d4a1f85a024/merged [2024-01-08 11:44:14,858] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-01-08 11:44:14,858] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-41625996/tmpbjzjr6rj [2024-01-08 11:44:15,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n01_KHC-001_r2_fastqc.html [2024-01-08 11:44:15,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n01_KHC-001_r2_fastqc.html [2024-01-08 11:44:15,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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HNTFHDMXY_n02_MTH-009_r2_fastqc.html [2024-01-08 11:44:39,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-009_r2_fastqc.html [2024-01-08 11:44:39,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-010_r2_fastqc.html [2024-01-08 11:44:39,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-010_r2_fastqc.html [2024-01-08 11:44:39,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-011_r2_fastqc.html [2024-01-08 11:44:39,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-011_r2_fastqc.html [2024-01-08 11:44:39,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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HNTFHDMXY_n02_MTH-015_r2_fastqc.html [2024-01-08 11:44:39,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-015_r2_fastqc.html [2024-01-08 11:44:39,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-016_r2_fastqc.html [2024-01-08 11:44:39,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-016_r2_fastqc.html [2024-01-08 11:44:39,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-017_r2_fastqc.html [2024-01-08 11:44:39,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-017_r2_fastqc.html [2024-01-08 11:44:40,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-018_r2_fastqc.html [2024-01-08 11:44:40,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-018_r2_fastqc.html [2024-01-08 11:44:40,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-019_r2_fastqc.html [2024-01-08 11:44:40,145] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-019_r2_fastqc.html [2024-01-08 11:44:40,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-020_r2_fastqc.html [2024-01-08 11:44:40,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-020_r2_fastqc.html [2024-01-08 11:44:40,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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HNTFHDMXY_n02_MTH-024_r2_fastqc.html [2024-01-08 11:44:40,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-024_r2_fastqc.html [2024-01-08 11:44:40,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-025_r2_fastqc.html [2024-01-08 11:44:40,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-025_r2_fastqc.html [2024-01-08 11:44:40,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-026_r2_fastqc.html [2024-01-08 11:44:40,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-026_r2_fastqc.html [2024-01-08 11:44:40,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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HNTFHDMXY_n02_MTH-033_r2_fastqc.html [2024-01-08 11:44:41,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-033_r2_fastqc.html [2024-01-08 11:44:41,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-034_r2_fastqc.html [2024-01-08 11:44:41,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-034_r2_fastqc.html [2024-01-08 11:44:41,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-035_r2_fastqc.html [2024-01-08 11:44:41,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-035_r2_fastqc.html [2024-01-08 11:44:41,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-036_r2_fastqc.html [2024-01-08 11:44:41,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-036_r2_fastqc.html [2024-01-08 11:44:41,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-037_r2_fastqc.html [2024-01-08 11:44:41,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-037_r2_fastqc.html [2024-01-08 11:44:41,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-038_r2_fastqc.html [2024-01-08 11:44:41,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-038_r2_fastqc.html [2024-01-08 11:44:41,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-039_r2_fastqc.html [2024-01-08 11:44:41,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-039_r2_fastqc.html [2024-01-08 11:44:42,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-040_r2_fastqc.html [2024-01-08 11:44:42,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_MTH-040_r2_fastqc.html [2024-01-08 11:44:42,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTFHDMXY_n02_undetermined_fastqc.html [2024-01-08 11:44:42,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTFHDMXY_n02_undetermined_fastqc.html [2024-01-08 11:44:42,734] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-01-08 11:44:42,736] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-01-08 11:44:42,815] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 149 samples (table) [2024-01-08 11:44:42,816] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-01-08 11:44:42,826] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-01-08 11:44:42,832] multiqc [DEBUG ] No samples found: conpair [2024-01-08 11:44:42,838] multiqc [DEBUG ] No samples found: peddy [2024-01-08 11:44:42,843] multiqc [DEBUG ] No samples found: somalier [2024-01-08 11:44:42,849] multiqc [DEBUG ] No samples found: methylQA [2024-01-08 11:44:42,859] multiqc [DEBUG ] No samples found: mosdepth [2024-01-08 11:44:42,865] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-01-08 11:44:42,869] multiqc [DEBUG ] No samples found: qualimap [2024-01-08 11:44:42,874] multiqc [DEBUG ] No samples found: preseq [2024-01-08 11:44:42,881] multiqc [DEBUG ] No samples found: quast [2024-01-08 11:44:42,888] multiqc [DEBUG ] No samples found: qorts [2024-01-08 11:44:42,893] multiqc [DEBUG ] No samples found: rna_seqc [2024-01-08 11:44:42,900] multiqc [DEBUG ] No samples found: rockhopper [2024-01-08 11:44:42,906] multiqc [DEBUG ] No samples found: rsem [2024-01-08 11:44:42,918] multiqc [DEBUG ] No samples found: rseqc [2024-01-08 11:44:42,924] multiqc [DEBUG ] No samples found: busco [2024-01-08 11:44:42,929] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-01-08 11:44:42,935] multiqc [DEBUG ] No samples found: disambiguate [2024-01-08 11:44:42,943] multiqc [DEBUG ] No samples found: supernova [2024-01-08 11:44:42,957] multiqc [DEBUG ] No samples found: deeptools [2024-01-08 11:44:42,962] multiqc [DEBUG ] No samples found: sargasso [2024-01-08 11:44:42,968] multiqc [DEBUG ] No samples found: verifybamid [2024-01-08 11:44:42,974] multiqc [DEBUG ] No samples found: mirtrace [2024-01-08 11:44:42,979] multiqc [DEBUG ] No samples found: happy [2024-01-08 11:44:42,985] multiqc [DEBUG ] No samples found: mirtop [2024-01-08 11:44:42,993] multiqc [DEBUG ] No samples found: homer [2024-01-08 11:44:42,999] multiqc [DEBUG ] No samples found: macs2 [2024-01-08 11:44:43,004] multiqc [DEBUG ] No samples found: theta2 [2024-01-08 11:44:43,010] multiqc [DEBUG ] No samples found: snpeff [2024-01-08 11:44:43,018] multiqc [DEBUG ] No samples found: gatk [2024-01-08 11:44:43,024] multiqc [DEBUG ] No samples found: htseq [2024-01-08 11:44:43,031] multiqc [DEBUG ] No samples found: bcftools [2024-01-08 11:44:43,036] multiqc [DEBUG ] No samples found: featureCounts [2024-01-08 11:44:43,044] multiqc [DEBUG ] No samples found: fgbio [2024-01-08 11:44:43,058] multiqc [DEBUG ] No samples found: dragen [2024-01-08 11:44:43,064] multiqc [DEBUG ] No samples found: dedup [2024-01-08 11:44:43,070] multiqc [DEBUG ] No samples found: damageprofiler [2024-01-08 11:44:43,098] multiqc [DEBUG ] No samples found: biobambam2 [2024-01-08 11:44:43,103] multiqc [DEBUG ] No samples found: mtnucratio [2024-01-08 11:44:43,106] multiqc [DEBUG ] No samples found: picard [2024-01-08 11:44:43,111] multiqc [DEBUG ] No samples found: prokka [2024-01-08 11:44:43,116] multiqc [DEBUG ] No samples found: samblaster [2024-01-08 11:44:43,125] multiqc [DEBUG ] No samples found: samtools [2024-01-08 11:44:43,131] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-01-08 11:44:43,138] multiqc [DEBUG ] No samples found: bamtools [2024-01-08 11:44:43,144] multiqc [DEBUG ] No samples found: jellyfish [2024-01-08 11:44:43,152] multiqc [DEBUG ] No samples found: vcftools [2024-01-08 11:44:43,158] multiqc [DEBUG ] No samples found: longranger [2024-01-08 11:44:43,164] multiqc [DEBUG ] No samples found: stacks [2024-01-08 11:44:43,169] multiqc [DEBUG ] No samples found: varscan2 [2024-01-08 11:44:43,187] multiqc [DEBUG ] No samples found: bbmap [2024-01-08 11:44:43,193] multiqc [DEBUG ] No samples found: bismark [2024-01-08 11:44:43,199] multiqc [DEBUG ] No samples found: biscuit [2024-01-08 11:44:43,204] multiqc [DEBUG ] No samples found: hicexplorer [2024-01-08 11:44:43,210] multiqc [DEBUG ] No samples found: hicup [2024-01-08 11:44:43,215] multiqc [DEBUG ] No samples found: hicpro [2024-01-08 11:44:43,220] multiqc [DEBUG ] No samples found: salmon [2024-01-08 11:44:43,226] multiqc [DEBUG ] No samples found: kallisto [2024-01-08 11:44:43,232] multiqc [DEBUG ] No samples found: slamdunk [2024-01-08 11:44:43,237] multiqc [DEBUG ] No samples found: star [2024-01-08 11:44:43,244] multiqc [DEBUG ] No samples found: hisat2 [2024-01-08 11:44:43,257] multiqc [DEBUG ] No samples found: tophat [2024-01-08 11:44:43,263] multiqc [DEBUG ] No samples found: bowtie2 [2024-01-08 11:44:43,270] multiqc [DEBUG ] No samples found: bowtie1 [2024-01-08 11:44:43,275] multiqc [DEBUG ] No samples found: snpsplit [2024-01-08 11:44:43,280] multiqc [DEBUG ] No samples found: kat [2024-01-08 11:44:43,285] multiqc [DEBUG ] No samples found: leehom [2024-01-08 11:44:43,291] multiqc [DEBUG ] No samples found: adapterRemoval [2024-01-08 11:44:43,296] multiqc [DEBUG ] No samples found: clipandmerge [2024-01-08 11:44:43,302] multiqc [DEBUG ] No samples found: cutadapt [2024-01-08 11:44:43,308] multiqc [DEBUG ] No samples found: flexbar [2024-01-08 11:44:43,314] multiqc [DEBUG ] No samples found: kaiju [2024-01-08 11:44:43,319] multiqc [DEBUG ] No samples found: kraken [2024-01-08 11:44:43,325] multiqc [DEBUG ] No samples found: malt [2024-01-08 11:44:43,330] multiqc [DEBUG ] No samples found: trimmomatic [2024-01-08 11:44:43,335] multiqc [DEBUG ] No samples found: sickle [2024-01-08 11:44:43,341] multiqc [DEBUG ] No samples found: skewer [2024-01-08 11:44:43,345] multiqc [DEBUG ] No samples found: sortmerna [2024-01-08 11:44:43,351] multiqc [DEBUG ] No samples found: biobloomtools [2024-01-08 11:44:43,357] multiqc [DEBUG ] No samples found: fastq_screen [2024-01-08 11:44:43,363] multiqc [DEBUG ] No samples found: afterqc [2024-01-08 11:44:43,370] multiqc [DEBUG ] No samples found: fastp [2024-01-08 11:44:46,845] multiqc.modules.fastqc.fastqc [INFO ] Found 298 reports [2024-01-08 11:44:46,852] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_KHC-008_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_KHC-009_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_KHC-012_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-002_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-006_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-007_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-017_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-036_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-039_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-058_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-066_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-069_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-072_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-074_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-081_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-083_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MHC-088_r2' [2024-01-08 11:44:46,853] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-006_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-012_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-017_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-020_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-026_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n01_MTH-032_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_KHC-008_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_KHC-009_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_KHC-012_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-002_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-006_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-007_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-017_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-036_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-039_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-058_r2' [2024-01-08 11:44:46,854] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-066_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-069_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-072_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-074_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-081_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-083_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MHC-088_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-006_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-012_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-017_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-020_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-026_r2' [2024-01-08 11:44:46,855] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HNTFHDMXY_n02_MTH-032_r2' [2024-01-08 11:45:14,948] multiqc [DEBUG ] No samples found: pycoqc [2024-01-08 11:45:14,953] multiqc [DEBUG ] No samples found: minionqc [2024-01-08 11:45:14,960] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-01-08 11:45:14,966] multiqc [DEBUG ] No samples found: clusterflow [2024-01-08 11:45:14,971] multiqc [DEBUG ] No samples found: bcl2fastq [2024-01-08 11:45:14,978] multiqc [DEBUG ] No samples found: interop [2024-01-08 11:45:14,984] multiqc [DEBUG ] No samples found: ivar [2024-01-08 11:45:14,990] multiqc [DEBUG ] No samples found: flash [2024-01-08 11:45:14,996] multiqc [DEBUG ] No samples found: seqyclean [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-01-08 11:45:14,996] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-01-08 11:45:14,997] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-01-08 11:45:14,997] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-01-08 11:45:14,997] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-01-08 11:45:15,338] multiqc [INFO ] Compressing plot data [2024-01-08 11:45:15,543] multiqc [INFO ] Report : multiqc_report.html [2024-01-08 11:45:15,543] multiqc [INFO ] Data : multiqc_data [2024-01-08 11:45:15,543] multiqc [DEBUG ] Moving data file from '/state/partition1/job-41625996/tmpbjzjr6rj/multiqc_data' to '/vast/gencore/GENEFLOW/work/2d/0e4bd44542a115d5734d4a1f85a024/merged/multiqc_data' [2024-01-08 11:45:15,804] multiqc [INFO ] MultiQC complete