FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MTH-029_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MTH-029_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTTGAAAGCTTCAGTCTCGGAACATGACCTTTAGTCTGTGGACTCC16.25No Hit
CTCTAGTCTGGCACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAG16.25No Hit
GGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTA16.25No Hit
CCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCGGGT16.25No Hit
TTTTGAGGTCTGTTTTTAATTATTAATAAGTTCTCACTAAAGTTAGATTC16.25No Hit
GTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC16.25No Hit
GTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCG16.25No Hit
GTCCGTCCGTCCGTCCGTCCTCCTCCTCCCCCGTCTCCGCCCCCCGGCCC16.25No Hit
GCAAGATTCAAACTCCGTAGCATGTCTCCTGCTCCCATCTCTTAGGAATG16.25No Hit
CAGCGGATGAGAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAA16.25No Hit
GCCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTT16.25No Hit
GGATTCCTATGTGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTCACCC16.25No Hit
CATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAAT16.25No Hit
TCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGCGGAGATGGG16.25No Hit
GTCTTTAGTAATCATTTTGTTACGGATTTCTAACTTAAAAAATCTGTTGT16.25No Hit
CAATAAATTGACATGCAAAATCCCGTTGTCAAGACGTAAATAAAGCTACC16.25No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)