FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MTH-023_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MTH-023_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGCACATCAGGTCACCCTCTGCCTCCTTAGCACCAACTGTGTCTAAGA15.263157894736842No Hit
TTTCTGTGTACCTAAGGGCCGTAACCAACGTCTCCTCCAATTTCACTCTT15.263157894736842No Hit
GTCTCTTATTGCAATAGGTGGCAACTGCGAGATACATGGCTCCAGAAGTC15.263157894736842No Hit
ACAAGTTCATTCATTTGTGATGGAACAAAAAATCAAAAAACCTATCATAA15.263157894736842No Hit
TGTGGACCTTCCAGGACGGACGGATGTGAGCAGTCCTGAGTGGGGACTGG15.263157894736842No Hit
GCGAGAGCCGGAGAACTCGGGAGGCATACCGGGCAGAGAGAGATACAGAG15.263157894736842No Hit
AGCAAGTAGAAGGTGTGACCAGGCGGCATGTCCTAAGTGACCTGGAAGAT15.263157894736842No Hit
CTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACC15.263157894736842No Hit
ATTTCTAGGAGGGATTGTTGGAGCCTATGGTAAGTGTGTGTTTAAATTTA15.263157894736842No Hit
CTTCCCCAGGCGTCCCTCGGCGCCTCTGCGGGCCCGAGGAGGAGCGGCTG15.263157894736842No Hit
AATAACTAGGAAAAGAATAAAAATAGTTCCTAAGTTAAATATAATACATA15.263157894736842No Hit
GTCTTCCCTGTCTTCCAGAAGATCTGGCTGACAGCGCTGTGCCTTGTGTT15.263157894736842No Hit
AGTGAGTTTGTCAAGCAACTATCGACTTGATCAGTTCAGCCAAGCAACTG15.263157894736842No Hit
GACAGATAAACTTCTCTATCCACAATACACTCTGATGTTTTGTTAGAAGT15.263157894736842No Hit
CGGGTCTCCCACAGAACCCCCAAAAATAACCCCAGACCAAAGGTCACTCA15.263157894736842No Hit
AGAAGGGCCGCCCGACAGCGGGCACGGGGGAGCCGCAGCGTGGTGGCTGG15.263157894736842No Hit
CGAGAGGAAAGATCCCAGCATTTTTTCGACACATCAGTACCACTAATGGA15.263157894736842No Hit
CGTGTGGGCAGCGAGAGCCTAGCAGGCATGTGGGGTGCCCAGCAAAGGGT15.263157894736842No Hit
CAAAATCTGAGCATTCTTGCCAACACAAGTTATGATGTGACATTCAGTTT15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)