FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MTH-008_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MTH-008_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAGAAGCCCTATGAATGCAGTGAATGTGGAAAAACCTTTATCCAGAA23.125No Hit
CCAAAAGTGCTAGGATTACAGGCATGAGCCACTGTGCCTGGCCAAGATAC11.5625No Hit
CACAGTCTGAGGACAGGGTGGAGCTGGACAGTCAGCAGAGCCCACACGAT11.5625No Hit
GGAAATTTAAAAATTTCTCCACAAGACATCCAACATCAGCACACTATAAG11.5625No Hit
CCCCCGTCTACTGACCAATCAGCGTGGCATGAGGCCTACGCCACCCCAAC11.5625No Hit
GATGAAGAACGCCGAAAGAAGGAAGAACAAGTCATACAGGTCTGGAACAA11.5625No Hit
GTGTTGTATAACTTTGCTGTATATCAAACTAATTTTGACAAGTTTTCATC11.5625No Hit
CCACTACATTAACAAAGATACAGAAGACTCTGTGATAACAATTAGATCAA11.5625No Hit
GTGGAACCATCTGTATCAGTTTCTGCCGATTTGCTCCTCTGAGATTCAGC11.5625No Hit
GACTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCGGTGAG11.5625No Hit
GTCTAGAGGCTTTTGTGTAGGTAGCCCAAGGAAGATGGAAAAATAATTCA11.5625No Hit
GTCCCGCCGGCCCGACGTGCTTCCCTCTCTCGGCGCTTAGCGCGAGCGTC11.5625No Hit
CTACAGATATCAGTATAGGACTGCAGCAGTCTAGGTCTCCGGCCACAACT11.5625No Hit
ACCGACACGGGCGTCTATACAAATTCCAACGGCATCCTGAATTCTTTCGA11.5625No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT11.5625No Hit
GGAGAGGGCCCTGAAGTGGATGTGAAGCTGCCCAAAGCTGACGTTGATGT11.5625No Hit
ATTGAGTTCAAAGAAACCAGAGAAAAGCCAGGAAAGAGTGGTGCTACCAG11.5625No Hit
AACGCGAGAGCGGCAGCCGCAGGTGCTTATTCTTTTTTAGAGAAGAGGGA11.5625No Hit
AGCTCATGCTCAAGATGGAAGATCGCCTCAAGCTCGTCAACGCCTCTGTC11.5625No Hit
GAATAATTTTATAATAATTGAATTAATAAAAATCCCTCTAATTACACTCG11.5625No Hit
CGTTAGTAAACCTTTCAAACCCAAATTGCACACACACCACCACCAAACCC11.5625No Hit
CCGACTTTAACAGGAGAGCCCCGGGGTCACGGTCCCAAAAGCACACGATG11.5625No Hit
GAGAAGATAATGACCATCTTCAACTTTCTGCAGAAGTCGTGGAAGGTAGT11.5625No Hit
GTTGATCTTGGTCTCCTCCTCCGTTGCCTCCCCGGGCCCATGCCTCAGCT11.5625No Hit
TGGGCATGTAGGTTGGTTCCATATCTTTGCAATTCTGAATTGTGCTGTGA11.5625No Hit
CAAACACTGCACTGCCTGTGCTGAAATTAGTGACCACCCAGTGGGCTCCA11.5625No Hit
GTTTAAAATAACGAGAATTTCTGGCCAAATTGCTAAAAAACAATACTAAA11.5625No Hit
GCATCACTTGCACTTGGAAGAATGTGCAATTGAGAAGTACTAGGAAAAGG11.5625No Hit
AGAGCACTTAGAAAACCTCCTGGAGGCGTGGCTAGGGAGACAGTCTCAGA11.5625No Hit
AAACTATTTAAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGT11.5625No Hit
CGCGTTGAGCTCACTTCCAGTGCTCCCCTCTGGCGGGTGCGCCCTGGCCG11.5625No Hit
AAGCCAATCAAGATCACTTAAGGAGTAAATCACTTCTGTATACAAAGAAT11.5625No Hit
CAGACCACCGAGGCGGAAACCCCAGACCCGCGGCAAGACTTACCAACGCC11.5625No Hit
CATGTCTGCCAGATTTCTCTACGGTAGAGCTACTATTTCTTTCCATACTT11.5625No Hit
AATGGTGCTGTCTCCAGCAACTGGCATGCTGAAGAAGAATTGATTCACGG11.5625No Hit
TTATAAGATACTTTGCGATCTGAGGAGTGTGATGAAATCTCATGCTGTCC11.5625No Hit
GTTCCTCTAGGACTCAGGCCCGGGCCTGTCTAGCTGGGAATCTGGCTGAG11.5625No Hit
CTGGGCGGAGGTGAGGGGTGGTCTGAGGAGTGATGTGGAGTTAAGGCGCC11.5625No Hit
CCCGGGAGGCGGAACTTGCAGTGAGCCAAGATCACGCCACTACACTCCAG11.5625No Hit
CTTCTTTACATTGATACTTAGAGATTTGCAGCTCTCTAACTTTCAAGGAA11.5625No Hit
ATTTTTGACAGCTCAATCCAGAATACATATTAGAATTCAGTAGAGTTCTT11.5625No Hit
GTCTCACAGGTCACTCAACACCTCGTAACCTCCACATAGCAAAAGCCCCA11.5625No Hit
AATGGATTCTGGGTATTTATTAAAAACTTTAACACAAAGACTGTTAAATA11.5625No Hit
CTGGAAAGTTAATGACAAAATTTAATTAATTCATGGACAGGTGTGAGAAG11.5625No Hit
TAAATACAGACAGGTACACAATATGTCACACAGGTAGGATTTCAGAGACA11.5625No Hit
GCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCAGAGACAAGGACGGCA11.5625No Hit
ATACCGTGCAAGGCAGTCATAAAGATAAAGAGAAAGGAATCCAAAAGTGG11.5625No Hit
TGGTGGGCTCCTGTAGTCTCAGCTACTCGGGAGGGGCTGAGGCAGGAGAA11.5625No Hit
TTCCTGGAAGCCAGTGGCACGTTTCCCCGCTTAGCTCGCTTATCCCACAG11.5625No Hit
ATTTGTTCCAACATAATTAGAATCTGTTTGGTGAGTTGAAAGGTAAGTTG11.5625No Hit
TCTTCTTTATGGAACATATGTTACCATCCTGCCAGAACTTGGGGGTTATA11.5625No Hit
GTTAAAATGTTCCATGCTTTGAGGAGTGACCCATTTCACTACTTTGTTTT11.5625No Hit
CTTCTGTCTTCTTAGTAAGGTGAACAGTGAGTCATCCACACAGATTATAA11.5625No Hit
GTATAAACAATTTACAGTGGTATAGACAAAATTCAGGTAGAGGCCTTGTC11.5625No Hit
GAAAATTGGTACTGAGTAGTGGTCTGTTGCTATAACAAACACCTGTGAAA11.5625No Hit
AAACAACTTCAGTGACTGTGGTGTATATGTATTGCAGTATGTAGAGAGCT11.5625No Hit
CGACAGGATGTTAGTCGTTCAAGACCCCTTCGCCCCCACAACCTAACGCC11.5625No Hit
AAAGGAATTCATTAGCCATGGATGTATTCATGAAAGGACTTTCAAAGGCC11.5625No Hit
CTAATAAAAATGCAAAAATTAGCTGGGCATGATGGTGAGTGCCTCTAGTC11.5625No Hit
TGAAAAGACTTAACAGCCTTCTCAATATCCCAGAAAAGTGTCCTGAACAG11.5625No Hit
AAAAGTGTTAATTAGTGGAATGTTTTGTAAGAAAAATTCATTTAAACCAC11.5625No Hit
ACCACCCAAACCCCCTCTGGGCCCAGGCCCCATGCCCCGAGGAGGGGTGG11.5625No Hit
CAAAGAACAAGAACAGCACATAGGCACTACAGCAAGAATACATATCTACA11.5625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)