FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MTH-004_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MTH-004_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGTAGAGACTGAAATATGTTTTTACGACAGTGAAATACCACTACTTT111.11111111111111No Hit
CACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTG111.11111111111111No Hit
GACATGATTATAACATCTGATGTCTCTCGATATATTGAAGACCCTGGTTT111.11111111111111No Hit
GGTAAATACATGCACAATATATACATTTTTCGTATTGCTCTAACAAATTA111.11111111111111No Hit
TGAAGACACTGTATTGTTTGTCCCACAGAGTTTTCCTTCCTAGGTTCTAA111.11111111111111No Hit
AGTGTCTCGCCTTGGATTGCCAACAGTTCAGCAATGGGGCACCAGTTTTA111.11111111111111No Hit
CTGTAGTCCAGCCTGGGCGACAGAACGAGACTCCGTCTGAAAAAAAAAAT111.11111111111111No Hit
GAAGCGACACGTAATGGATCCGTCCATTTTTAGTGTGTATCAATCGAGTT111.11111111111111No Hit
CATACCACACACCTAACAGTATGCATGTCATTTCATATCATTTCTATTTC111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)