FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MHC-075_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MHC-075_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACCCTTAGTTCCTAAAACCTGATGGCTGTACTTAGCCCTCAGTAAA111.11111111111111No Hit
GTGGCTGTGTATGATCTATAAGATCAATAAAAAAAACACAAAAAATAATA111.11111111111111No Hit
CGTGTATTAGTGCCACTTGATTAATTTTCCCAAAGAAAAATATATATGTA111.11111111111111No Hit
CCCTCTTACTACAATTTCAAAGAATCAATGATATACGCAACCCTAAAAAA111.11111111111111No Hit
TGGAAATGTAGAACACCCGCACAAATCAAACGTCACCAGACCATAACACT111.11111111111111No Hit
AATATCAAAAACACATAGACTGCAGAAACTCACTCCAAAAGCTGCTACAA111.11111111111111No Hit
CACTTACAATACAATTAAAAATCATATAAAAACAGAGAAATACAACTCAT111.11111111111111No Hit
AGTCACTTTGGTTGAAAAGCTAGTAGGGAAGAGGGCTGCTTCAGGGAGGT111.11111111111111No Hit
AACCAGTGCCAGGACACAGGATAATTTTTTTTTTCTGCTCTCATAACAAG111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)