FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MHC-047_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MHC-047_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTTGCGTATCTCAGATTCTCTGTCTGCTAGATCATTAAAATTAGGATG19.090909090909092No Hit
GGGGGGAGCCGCGGGGATCGCCGAGGGCCGGTCGGCCGCCCCGGGTGCCG19.090909090909092No Hit
AAGGCATCTACGCTGGGCGGCAGATGAAGGAGGCCAGCCCCTCCACACCT19.090909090909092No Hit
AGCTCTTCAGCAAAAAACCCAAGCCCCCATCCAAGGTGAAGTCCAGTAGC19.090909090909092No Hit
CGAGAGGCTGCGGGAGGAAAATTTGGAGCTCAAGAAGTTGTTGATGAGCA19.090909090909092No Hit
GTGATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATATAT19.090909090909092No Hit
AAAAGACTGTGAGCAAATTTCCATCTAAATATTAATAATTCTGAAGAAGA19.090909090909092No Hit
AGAGAGTCTCCCAGGAATGTTACATTCAAAGTCCAGCTTTGAAGTTGTTA19.090909090909092No Hit
CTTCAGAAAAGCAAGAGACTGTATGTATTTTTGGAACTGGTGATTTTGGA19.090909090909092No Hit
ACCACAAGCTGAAAAAGATGCATCAAAACTAACAACAACATATGATCAAA19.090909090909092No Hit
ATAAAAGAATAATCTATTACATAAAAAAGGAAGTATATATTCTGAGTAAA19.090909090909092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)