FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n02_MHC-029_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n02_MHC-029_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAACAGTTTATTTGGGGAATGTATTCTAAGAAATATGCATTTCATACC14.545454545454546No Hit
TCTTGAGTGTGTACTTGTTAAGCCTTTTAAGAAAAAAGTTATTAACTTAA14.545454545454546No Hit
GGACTACGAAAAGGAGTACCTTGCCACCGTTATTGAGGTTCTCTACGGAG14.545454545454546No Hit
CGAGTTTTTAAAAATATGCTTATATTTGTATCTTTGATGCTTATATTTTG14.545454545454546No Hit
GTACAAAGAGCTTTTGAAAAAAAAGAACAAATTGAATAAAAAATGTGACC14.545454545454546No Hit
GTTGCCCTAACGGCGTACCAACCCGTGGACGTCGTCACCAAAACGGTTGA14.545454545454546No Hit
AAATAGTTGCTCTGCTTTATACTGACCACACCAAGCCCAAGAAAGAATAA14.545454545454546No Hit
ATTTCTAATCGATAGTGGAAGTTCTTTTATGAATGCTTCAGTTTTCTTAG14.545454545454546No Hit
GCTGAGGCAGGATGTTGTCAATTGGCTCAACGAGGAGAAGATCGTCCAGC14.545454545454546No Hit
TGTTGAATCTTCATTGCAAGTGCTGTAAAATGAAGTGTAAAGATGCAGTT14.545454545454546No Hit
GGACGGGCGATGGCCTCCGTTGCCCTCGGCCGATCGAAAGGGAGTCGGGT14.545454545454546No Hit
CTTTTGTGTGGGTGTGTTGGGGGGTGGGGTGTTGGTGTGGTGGGGGGGGG14.545454545454546No Hit
ACCTTCTATACGCACAATTAATGTAATATGTTAATTATTGTAGAACTGGC14.545454545454546No Hit
CTTGATTCATTTCTTGAGTGTGTACTTGTTAAGCCTTTTAAGAAAAAAGT14.545454545454546No Hit
GGGCACCAGGTTGATGGAGAAGTCAGTAACCCAGAAAGACGCCAAGAAAC14.545454545454546No Hit
GTTTCTTGTCAACTGTGATTGGACCAGAGTTAGCCGCTCCTAAGGGATAG14.545454545454546No Hit
AGAAAACCCTCCTTGCACATCGACTAAATAAAATGGTAAAAGTTTCAACA14.545454545454546No Hit
CTCAAAAGGAAAATCCCTCGGTTTGTGCAAGCTTACCTTGGGAATTGTCA14.545454545454546No Hit
GGGGTTCCGGGATATTTGTTGAGCGTTTACGATAGGCGTTAATGTTGCCC14.545454545454546No Hit
GTCAGGAGTTAGAGACCAGCAAAAAAGTTGGCTGGGTGTGTTTGCGGGCA14.545454545454546No Hit
GAAATTCAAGTGCAACATATTCGACGAAGAGTGCTACATCATCGAATGCA14.545454545454546No Hit
TGAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCC14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)