FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MTH-040_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MTH-040_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length101
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTATTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACAT16.25No Hit
CTTCCACCAAGATCTGCACTAGGGATATGTTCCACGAAAACTCACGTATT16.25No Hit
CTCCTTTTTCTCATGTAGGCGGGCACTTCGACGTTCTTCTGAGTAGGCAT16.25No Hit
TGAATTGATTCAGCGAACCTCTTCTCCAAGTAAATTGATTCCAAGGTTTG16.25No Hit
GGGAGGGACGTGTTGAAGAAGAGAACTTTCTAACTCCAGACAAACGCTTT16.25No Hit
CTCCGGCTATCTAAACTTGATGTTAAACTTCCCTCGGTGCAACTTAATTC16.25No Hit
CTTTTGATAAGAGTTATAAAACCAGTTGTCCCCTCGTTAGAGTGGGGACT16.25No Hit
ACTACTGATCCCAATGTATTGTAATGAGTTGTTTGCTGTCCCTCTCTTTT16.25No Hit
CCCCAATAACCTACAAATAAAAGTAACTAAAACACAATAACATAAAAATA16.25No Hit
CCCCATCACGATATGTACTGATAAAGATTACCTACACTTTTCAGTGGAGG16.25No Hit
CTACCAAATATGCTCTTACTCAATATCGCGTAATTGCTTATCGGTATTGT16.25No Hit
CTCAAAAACGTTATGCTAAATGAAAAAAGTCAGATATAGGAAACCACATG16.25No Hit
ATACGTTCATAAATGCAAAAAAATTCTGATTTATATATGAAATAATTTCT16.25No Hit
CCTTCATCTAACATAAAACACCTTAAATTAGGGATGGAGTGGGGGGAAAA16.25No Hit
GTCGCTTCTTTGTTATAAATCATTAAGTTAATAACTTTTTTCTTAAAAGG16.25No Hit
CTAAAAAGAAGAAGTTCTTTTCTTGTCCTTTTATGGCTTGGTATCGGTAA16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)