FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MTH-035_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MTH-035_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG17.142857142857142No Hit
GCTTTCTGTGGGATGAATATAGTTTTCATCATTATCTTCCACGGGGACCA17.142857142857142No Hit
CCTAACCAGGAATATTCTGACTGACGGGCCACTAGCACTACCAGATATTA17.142857142857142No Hit
CACCAGTTGCATTCTGGGGCTCGTTCTTGGGAAGCTTCTTAGCTATTGCC17.142857142857142No Hit
CAATCATGTAGCAAAAAATTAAAGGGAAAAACATTTTTTTGCTGGTTGTT17.142857142857142No Hit
GGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCG17.142857142857142No Hit
TCTGTCGACTAATTTATCTACACACAAGGATGCTGCAGGCAACTGAGCTA17.142857142857142No Hit
GTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC17.142857142857142No Hit
CTAATTTTTTGTATTATCAGTACAGAAGGGGTTTCTCCATGTTCTTCAGG17.142857142857142No Hit
GTCCGTGGTCCACAAGAAGTTTCCTAGCAGCTCCACCACCTGCAGGAGGA17.142857142857142No Hit
CCTGATCACAGCACAATTCAGAATTGCAAAGATATGGAACCAACCTACAT17.142857142857142No Hit
GCCCGGCTCGCGTCCAGAGTCGCAGCCGCCCCCGGGGCCCCGGGGGCCCG17.142857142857142No Hit
CTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGGGCGGGCGGCGGGCC17.142857142857142No Hit
CTGGGAGGCTGAATTTTTAACAAGTGCCTCACGTAACTCTCAGCAGCAGC17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)