FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MTH-029_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MTH-029_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCAC16.25No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA16.25No Hit
CCCGTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCC16.25No Hit
GTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC16.25No Hit
GGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTA16.25No Hit
CACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCGCA16.25No Hit
TGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCG16.25No Hit
CGGAATATTTAAAAAGAATTGACCATGTCCTAGGCCACAAACCAAGTCTC16.25No Hit
GGCAGGTGAGTTGTTACACACTCCTTAGCGGATTCCGACTTCCATGGCCA16.25No Hit
ATTATTATTGCTGTTGCTGTTAGCAACAGAGTGAGGAATGCTAGGAGTGA16.25No Hit
GTTCAGGGGGGCCTCGGTCAGCAGCACGGGGTGCTCCTCGGGAGCCACAC16.25No Hit
CAACTAGCCCTGAAAATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGC16.25No Hit
TCCCAAAAAACAAAAAATAATCCATACATAAATGATACGTAATTCCAACT16.25No Hit
GGGGCCCCTAAAAACCAATTCACATCTATGCACTTGTTTCCACTGGATTT16.25No Hit
GCGGAGTAGAATATTAAAAGAAAAAACAGGTAAGCCATTAGGTTCCTAGG16.25No Hit
GTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCA16.25No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)