FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MTH-010_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MTH-010_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACTGCCCCAAGCCCAAAATATCAACTAAGATCCTTGTCTGTATTTC10.8No Hit
CTTGCTTGGCAACTGAGTGCTTTGCCCCTGCATCCCCTTCTACTAGCTCT10.8No Hit
GGCATTATAAGCTGCTTCCCGATTTTCCTCAGGCAGGTCAACCACACCTG10.8No Hit
CCCCTTATTACAGACCTTTTCAACCATTAATTAAATAAAATCAAATAATA10.8No Hit
GCATAATCGACTCCAGAGCAGATTTGAGGTACTCAGTGTGAAGTAGCTGA10.8No Hit
CTTCAGGAAAAACATACTCTGTTCCAAATGTGCCACTGAGGGAGAACATT10.8No Hit
GGGAGGCCAAAGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCC10.8No Hit
CGGGCACAGCGGGGTCTAAGGACCGTTCCGCGGAGCTCAGCCAGCAGGAC10.8No Hit
CTTGTTTTCCAAACTGATTTTAGGTGATAGTTTCCCCTCTAGTCTTGGCT10.8No Hit
AGTCATGCCTTCGGGTCTGGAGACAGGAAAGAGCTGAGGTAAGAGAAATG10.8No Hit
AGCAGCTCCAGTCCCTGAAGGTGTTCGTGCCAACAGCACAGCGGTACACT10.8No Hit
CAGCTACAGAGCCAACACCTGCTTTCCTGATCAAATCCTTGCTAACCAAT10.8No Hit
TTTAATATCCACGTCAGGAACTTTCATGTCACCTTCCACTTTTGGCAGAG10.8No Hit
CTGGCTTGAGCTCGAGAGGGAGGTTGAGGCTGCATGGAGCTGTGATCACG10.8No Hit
GCTAAGTGAAATAATCCAGGCACAGAAAGACAAATACGGCATGATCTCAC10.8No Hit
GCCACTCTTCTCTGGCACCCTCACGACTGTTACCATGACTGAGCACAGCA10.8No Hit
CTGCCCTTAAAAGAAAGTCAAAGAAATTGCCAAGAGCATGAATACAGAGA10.8No Hit
GTGCAGGACAGCGGGCGGGTGGGGTCGGGGAGGGGGGACCTTAAAGTGTT10.8No Hit
GCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGGCCTATATCTCTT10.8No Hit
GCTTAGGGTGTTGAACTTAAATTTGTGACTTTTATTCACTATTGGGGCTG10.8No Hit
CTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTT10.8No Hit
CCTCACTGTACTCCCCCTGCTGGGCCAGCACCTTGCCCTTGCGGAAGAGA10.8No Hit
CCCCTTTATCAGGGAGTACTTGTGGTAGACGTCGATGATAGAGTTCAAGG10.8No Hit
GTACAGATGGAGCTCTAGGGAAAGAGAAGATCCTGGGGGCTGGACTGGGC10.8No Hit
GGGCCATCTGGACATGGGTGCAGGGCTCATCTGTTGATCACCCAGCCAAG10.8No Hit
TTCTTAACCAGTCATTAAGACAAAACTCATTTCAGCAGTTCAAAAATTAA10.8No Hit
CTCCCTCTTGCTTCCGATGTCAGTTTGTTTCTTGCGGTGGGTGCAGGTGC10.8No Hit
AGCATCATGAGAGGAAGTCCAGCCCCATGGATGATGGCAGCCAAAGTTCC10.8No Hit
GCGTCTTGGAACACTTTGAGAATGAACATTAGGGATTGAACAAGAGAAAG10.8No Hit
CCCAGTACTTTGAGAGGCCAAGACAGGCAGACTGCTTGAGGTCAGGAGTT10.8No Hit
TCCCATCCCAAGCTTCTGTCCACGACTACCCAGGGTGGGGAAAAAGGCAA10.8No Hit
TGCCTGATCTCATATTGATGCCAACAGGAGCAGTTGCTGCAAACTGGTTT10.8No Hit
GTGGAAGTTCTGAGGGATCAATAGGTGGGCGTGAAGAAGTAGAGGGAGAA10.8No Hit
CTTCTGAATTACCATTAGTTGACTCATTCTGCTTTTCCTTCTGAGTTAGT10.8No Hit
GCGATATTTAAAAGAGAAAAAATAAAACATGTGATTAAAACTCTACACAC10.8No Hit
CCTCCTTCCTTTCCACAAAACCCTTTCCTTCGAGTCACGTATCATCAGAA10.8No Hit
CCTCTACAGAACAGATGGGCACTCTGGTTTTTTTAAAAAAGATAAAAGCA10.8No Hit
CCTGTGATGTGTAGCAGAATTCATCAGACTAGCTGTCTGTTCTGGCACTG10.8No Hit
CAGGGACCCACTTGAGGAGGCAGTCTGTCTGTTCTGAGATCTGAAACTCT10.8No Hit
CACATAATGCCGGTTCAGTTAGCCCTGCTCAGCTATGCCACTCCAACCCC10.8No Hit
GCTAGCATTATACTTCCATTGGACAGCACTGCCCTAAGGCCTCTGTCGTA10.8No Hit
GGGAGCACCTGATGCAGCAGGGGAGGCTGCAACAGTATTGGGTGTTTGCT10.8No Hit
GGGAAGAGAGCAGGAAAATTCTCCAATATTGATAAATCTGCAATTCATTT10.8No Hit
TCCCCAGCATCTTTTTGCCTTCTTCTCAAATCTGGCTGGCTCTGCGCCTT10.8No Hit
ATTATTACCTGCAATACTCATGGAAACAACGAAGGAACATCCTGAAAGAC10.8No Hit
CTCTTCAGCAGCTGGGGTTTCCACAGTGGCATTGGCACCAAATTCTTCAA10.8No Hit
CTGCCAGGTGTCAGGCTTAGACTGAGTGCCAGAATTACCCTCATGGAATT10.8No Hit
CTTTCCTCTGTGTGTTACCCATTGCTGCCAGTAAACTCAGCTGAAACTGA10.8No Hit
CTCAATTCTTAGTAGTTGAGATAAATGATATTTTAATGCAGTACTTTAAA10.8No Hit
CTGACCATCTAATTGTATCCAGTATTGCCTGTATTTTCCTGCACTGGAGC10.8No Hit
CCCGGTTTTCAATAACCTTCATACCTCTCTCACTCTCATCAGCAGCTTTT10.8No Hit
GATTAGTTCAGTGATACTGCGCTTGGTGGTTCTTTGTAAACTATTTTTGT10.8No Hit
GTGGGCGTATGTGTGTGTGAGGTGTGGGAGAGGGAGAGAGAAAGACAGAG10.8No Hit
TTTGTGAGATCCACCCCTGCCTGCAAAACATGGCTCTTCACCCCCTATCC10.8No Hit
CTGTCTCCTCCTGCGTCTTGCCCCGGTACAGCTTGAAGGTGTTACAAAAG10.8No Hit
GTCACTAGTAATTAGTAGCTTAAGTTTAATGTGAGATATGGTTGTTTCTG10.8No Hit
TGCAGCCTCAAACTCCTGGGCTCAAGCAATCCTCCCACTCCAGCCTCATG10.8No Hit
CCCACTACTAAATAAAATGAAAACAAAAACAAGATTAATAAAAAAAATAA10.8No Hit
GTCCAGGAGTTCAAGACCAGCCTGGGCAAGACAGGGACACCTCCATCTAT10.8No Hit
GCCATATGGTAATAATGAGAGTTGTTCAATAAAGCCTTAGAAGGAATACA10.8No Hit
TTAAATTATAACATATTTTAAAAAACAATTGAAATCTCAACTAACATACC10.8No Hit
TCCCGTCCTGCTGCTCCAGCGTGTAGGCCACCCAGCAGCCCTCTGAGTCC10.8No Hit
TCCTCTTTCAGGGCGATGTAATCCTTGCCGTCGTAGGCGTACTGGTGGTA10.8No Hit
GTCTATCTTTTCAGAATAAATTTTACTTTTCATGATCAGTGTAAGTATAC10.8No Hit
GAGGACATCAGTGCCTCCAGCCCCAGGTGCTGCTCGAGGCTCTCAGCCCC10.8No Hit
ACGGAGTTTAAAAGCACAATGTGAACATCAGGCTTTTGGCTTATTTTAAA10.8No Hit
GGCCCATAAAACTAACTGAATACATGAAGAACATGATAGATTGAGGATTC10.8No Hit
ATAGTTATGGCTCTTGCCATCTTGATCAATCCTAGTGCCTGAAAATGGCA10.8No Hit
TTCTTTGCATATGGGTTTAGCTTCAACATGATTCTCAAGTTTTTCAGTGG10.8No Hit
TGGCACCGTAGAGAGTGCTGGTCCAGCCAACTCAGGGAGGTCATCTTTCT10.8No Hit
CTCAGCAATATCTCGCAATTCCTCAGGATAGTACAGCATGTAAACCATAA10.8No Hit
CCTGTGTCTGGAGAGGCTGGTCATGTTCTTGAAGTCCTGCCATCTCTTCA10.8No Hit
GGGAAGGTTAAGGTAAACATGCAGCCTGGAATAGCCAGGAGAATTCTGGA10.8No Hit
GATAATGAGCTTTTTCCATATATTTGTTGGCTGCATAAATGTCTTCTTTT10.8No Hit
CTGGCTTCATGCCTTCTTGAGGTTCTCTGCGCCCATCCAGCTAGAGCTCG10.8No Hit
CCAATACCTTATCCAAACATTTTATTAGATAATACTTAAAGTATATAAAA10.8No Hit
CCACACATATCTTTTTATTTAACAAATACACACCACCATCATCATTTTAC10.8No Hit
CGTCGTCTTCTCCCTGAAAGGGGAGCAGCTGGGGGAATAATAACAGCAGG10.8No Hit
GTAGCACCATAGCTTTATATTCTTCTTCAGTGGGACAAGTGTAATTATCC10.8No Hit
CCTCTCAGTCCTCTGATGCAGACACTGGAGACGTAACAGTATAGAGAACA10.8No Hit
CCTCGATACAGCCAGAGAGCCATTCACACGCTGAATCATTACAGAGCCAC10.8No Hit
CCAGGGTGGAGGCGGCATCCACGGCGTCCTCCTCTTCCCCCTCATCCCGG10.8No Hit
CTCATTTCTTAATTTTTTTGTAGAGATGGAGTCTCATTACGTTGAGCAGG10.8No Hit
GCGCCTGCCAAAGCGGTTGACGAAGAGTCCGACGGAAAAGGAGCCGATCA10.8No Hit
CACATGAAAAAAAAAATTCTACAAAATCACCAAAAAATTTAATTACTAAA10.8No Hit
CGAGTGGCATTATTTGAAGTGAAGAAGCCCTGCACAGCCTTATACAGAAC10.8No Hit
GCCCATAGTACGCAAGTTTGCACTGCCGGCCAAAGTGGTGATGGTAAGAA10.8No Hit
GGAAGAAGGGGTGGAGTGAGCTCACAAGAAGAGTTTAGCGCCAAACCTAG10.8No Hit
GGCACATATTGAAACGATTAAGTTCTGAACTACTGTATTCAAAACACTCA10.8No Hit
CAAGAAGCCTATGAAGCGGCATGAACATGAACCGACAAGGAGACTGAGGC10.8No Hit
CTTCCTTGAACATGCAGTTACCGTAATATACGTGTTCCCGTTGCAAGGCC10.8No Hit
GGAGCCAATTTTTTAGATTAAAATAAAAAGCCACTCTTTAGCATAAACCT10.8No Hit
CTTTTCTTTCTTTCTCCTGCCAAACGGTCCTGGCTAGAGCCACTAGTACA10.8No Hit
CGTAAAAAAAAATTACCATCTTCCGCTTTCCCTCTTCACGTGAGTACCAA10.8No Hit
CTCGTTGATCTTAAAATGAGCAACTCAGAATTGTTCTGAGGTTGTGCTGT10.8No Hit
CACTGGGATGGTAGCAGCCTTCTGGAGGTCCATCTTTATCTTTTTGGCCT10.8No Hit
GCCAACATTGCATGTTCTCTTGTCTGTCCTCCTTTTTCAAATCCAGTTTC10.8No Hit
CTGTCACTTGCAGTCTGGTGGCCTCACTCAAGTCACACTCCTTTCCCCCA10.8No Hit
CTCCTGTGTGGATTCGCAGGTGGCTCTTCAGAGTCTGAAGGTGCCGGAAA10.8No Hit
GGGAAGGAGGGAGGGAGACAGGTTCAAGGATTCAGGGCATCCTGATGTAT10.8No Hit
TGTAATCCTGTAAAAGCTCCTAGAACGTATACTTCATTCTCTTCTTTTTG10.8No Hit
TCCGTCTTCTCGTTTGCCAGCTTGTCGTACTCCACTTTGAGGCTGTGATA10.8No Hit
TCCCAGGGCCTTCGCATCTACTATGCCCTCTTCTTGGAATGCTTTTTCCC10.8No Hit
CTCACAACAACCCTATTATTATTCCCATTTTACAGATGCAGCTAAGTAAC10.8No Hit
ACTTTCTGTTATTCTGCTCTTGTAAGCAGTTGATTGAACTGTTCAGAGTA10.8No Hit
GTCATCTTCATGGGTCATATTTGTGAGAACTCGGAAGAGTTGCATAAGAA10.8No Hit
AAATTGAGATTAACTTATTTTTCTTAAAAGGTTCATCTCAAGGATGGCAA10.8No Hit
TCCACGATCAATCGCTCTGAAGGCTTGCTCCACTCTTTCAGTACGAATAT10.8No Hit
CTCTGCTCATTGCACTTGTGAAGGAGTATTTGCGTCCCCAACTGGAAGAT10.8No Hit
CCTGGGGGTCCTACAGGGCGCTACTGCCAGCTGGCTGCTCCGCTTGGTCT10.8No Hit
TCAGGATCCACAGTCCACAGCACCACTGCTGTTGGCTCAGGCTCTGCCTC10.8No Hit
GTCTGAATGCCTCATATGGGATTGAAGTTTTGATGACCTGAGTGAATCAT10.8No Hit
CGCACGGGAGTAAAATAATGATGAAATAGGTATAAGAAATATAAAAATGA10.8No Hit
CAGCCATGTTCAACCTGTACACTTAAAAGGGCATTAGCAGGGGATTACAC10.8No Hit
GGCATGTGCTGTACCACTGCACTAGCCGTCTGTCTGTGTACAAGGTCTCT10.8No Hit
GCGTTACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTT10.8No Hit
AGCGCCTGTGTTCCAGGGAATAAAGCAGTGCTCCTATGTCTAGTCTACGC10.8No Hit
TGACGTAGAATATGTGCTGTCTGTGAGACCGTGTTCCCAGGAGCACTGAC10.8No Hit
GGGAAGATGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAG10.8No Hit
TGCATAGCAACTCTGGATCATAGAGGCTTTTAATTCTTGAGGGCACAAAG10.8No Hit
GGTTAATCTGGAAGTAACGTAATTCGTAACTCTCTTTGCTGTTAGCAACT10.8No Hit
CCTGTGGTGCGGTATGTCAAGGCAGGCAGGGGCTGGAACGTCACATCCAT10.8No Hit
CCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTTTT10.8No Hit
CTCTAATTCTTACTACCCTGGCCAAGAAAGCATTTTCACCTCCTGCGCTT10.8No Hit
CTTCTTTGTCTGAGTGTTCTTGCTGGATTATTTCTTCTGCTTGTTCCAAG10.8No Hit

[OK]Adapter Content

Adapter graph