FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MTH-003_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MTH-003_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCGATGGGCGTCCACTGCTCGCCACGCACAGCCGCCAGTAGGTAGA15.0No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT15.0No Hit
CTCCGCCGTTTGCACTGATCTGCTTCGCCGGATCGTTTGTAACTTCCACC15.0No Hit
CCCGAAATCAAACTTGAAATCAGTCATTGTCAGGGGCCCACCAGAGCAAG15.0No Hit
CTCCAATCTCAAAGAACACGACTCTAGAAGTAAAATTCCAAAAAATAGAA15.0No Hit
CACAGTTTCTTATCAAAATCAAAACTCCTAAGTCCCAATTCCAACAAGTA15.0No Hit
CCTGTACATAAACTGTGTTTCACTTCCAGATCAGTCTGACACTCTCCAAC15.0No Hit
TACCCTTTAGCTTAGAATATTGAATCAGTTGCCAAATTCTGCTACTTATT15.0No Hit
CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACAT15.0No Hit
CAGCAGGTTCAGTCTGACTGGCCATTGACAGTTTATGACAGGCATGGTAG15.0No Hit
CTTCACCACAAACACCCTCTGTCCTGACACCGTCACCAGCAGTGTGTGTT15.0No Hit
ATTTCAAATGTTTTCTATTTCCCACACTGTACTGTAAAATAAGATATTCC15.0No Hit
ATTCTCATCATTAATCCAATTACACACATCAAATCAAAAGGAATAACACG15.0No Hit
GAAACAACAGATGCTGGAGAGGATGTGGAGAAACAGGAATGCTTTTACAC15.0No Hit
GTGGACAATGGTTTCTTGGCCTCCAAGTGGTCATTCAGGCACTTCAGATT15.0No Hit
CATCCCTTCAATGCTAAGGCATTAATTGGAAAATAACAAAACATTACAAT15.0No Hit
ATTATCTCTACCTGGTAAAATTATATTAGTCAACTCCAGCGATCCTGAGA15.0No Hit
CACCATTACAAAATCCAAACGTTCATGGAAAAACAACAAAAACACCTTGC15.0No Hit
ATTAATCGTAACTAAGCCAAAATAAGAAAAAAGAACAAAATTCTGACTTG15.0No Hit
ATAGGATTATGAATGCATCCGTAGAGGAAGCACGTATAATTTCTCTTTTA15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)