FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-032_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-032_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCAC16.25No Hit
GCTCAGTCTGCCTTAGTATCGCTCCCTTGGAAAGTGATCTGGCCAACTGG16.25No Hit
ACTGTTCTGAGTGTGTCACGTGGATTCACTAAGTTCTCATACAAAGATAT16.25No Hit
TAAAAAACAAACAAACAAAAAATGGCAGGGGTTGAAAATGGTTGTGAAAC16.25No Hit
CCTGTGACTATGGATGAACTGTTGATGCTCAAAGCTGCGGCCAACCGCTT16.25No Hit
CCCCACGGTGTTATACAAGGTTTACATGTTTGTCTTATAATCACTGAATA16.25No Hit
CCAAACTATACATTAAAAATGAATAAGAAAAAAAGAACTTTGAGGGGAGC16.25No Hit
TGGCACTGTCCCCGGAGCGGGTCGCCGGCCCGGCGGGCGGGGCGCGGCGG16.25No Hit
GGCCCACTAGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGG16.25No Hit
TTATACACATTCTGGGTAGAATTCTCATTGGAGCCAGGGGTCCCTGAAAA16.25No Hit
CGCCCGTCCAGTGCAGACATTTGAAGCTAGGCGAGGCGGGTTACACAGCC16.25No Hit
CTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCAT16.25No Hit
GTCGCACTTTCCGGTCATCCCACTCTCCAGGCCCGAAGCTATCACTCACC16.25No Hit
CCACATTGCCAAGACAATCCTAAGCCAAAAGAACAAAGCTGGAAGCATCA16.25No Hit
AGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGAT16.25No Hit
CTCCTTCTCTACCCAAAACTGATCTTCAGATAAGGGTTAGATTCAGTATT16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)