FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-029_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-029_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTACGATTTTTTCTACAATGTGGGTGACATTCTTAGGCACGTGGATGAT14.545454545454546No Hit
GTTACCCGTCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGAT14.545454545454546No Hit
CCCCGTTACCCGTCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGC14.545454545454546No Hit
CACCTTACCCTTTTAACTCAAACACCCAACAACTCCTTCCTAAAGTTCTT14.545454545454546No Hit
GTCCTACCAAATATGCTCTTACTCAATATAGCGTAATTGCTTACCGGTAT14.545454545454546No Hit
GGCGGTGTGTACAAAGGGCAGGGACGTAGTCAGCACAATCTGATGAATCA14.545454545454546No Hit
CTCGCATCAAATTTGTAACTACTGGGCAGAGAAAGGAAAAGGTTTTTCCA14.545454545454546No Hit
CTTCCCTTGTCATCGGAGCACTGCGGGATGTACCCCTCGCTATTGCTCTG14.545454545454546No Hit
CTTGGTGGTACTCCATCACGCAGCAGTTGTTCAGGATCTCACCACTGCAC14.545454545454546No Hit
CTCACTGCTTTAAGCATACACGACACTTCGGTTTTATTCCTCCCTTTGTA14.545454545454546No Hit
CCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACC14.545454545454546No Hit
CCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACGCCTCGCG14.545454545454546No Hit
CCTTAAATTATTAATATAAAATCTTCACCAATAAAAAAGATTCCAAAATT14.545454545454546No Hit
GGCTGTAAAAAAAATTCATCTTTAATGTTTGCGACAAGTGTCTCATCTGG14.545454545454546No Hit
CACGGCGGACACGTGTAGAAAGGCATAATCAGGGGCAGGTACGCGACGGG14.545454545454546No Hit
CTCCTACACATATTTAGCTTTATGTGAAATGTATCACACGAATTAGTGCT14.545454545454546No Hit
CCATCTCTATTACACTCAAAATACTATCGGCACAGGAATATCAACCTGTT14.545454545454546No Hit
CCTCGAACATGTTGCTTAAGAGCTGCTCAATCGTCTCCTGCTTCTCCAGG14.545454545454546No Hit
GTAAGTTTAAATGATAGAAAGCGCTCCTGAGATTCAGGATTCAGACTTTT14.545454545454546No Hit
ACTGATGTCTGATGCACAGCGGGTGATCAATAAACGTGTGTTCAGTCTGT14.545454545454546No Hit
CAGGGTTGATTGGGAGAATTTATACCAGGAGAAAGAAGGAAAAAAAGGTT14.545454545454546No Hit
CCACACTTCTAACATCCGATATTACATCGTTCAGCTCGTTTTCCACTCCG14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)