FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-027_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-027_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25
Sequences flagged as poor quality0
Sequence length101
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTACTCCAAAACTTTCTCCTATCACATCTGGCACTCTGTATCTTCATC14.0No Hit
ATTAATTGCTTCACCCACCATCTTAAACGGGTAGATCTAAAGCCATCGTA14.0No Hit
GATTAATAACACAGACTCTGAAGACAGCCTGGCTTGGTTCTGCCATTTAG14.0No Hit
CTCCAGCTCTTCGATATCATCCTGCTGCTGGCTCCGTTCCTCCTGTGGCT14.0No Hit
CTCTGGTGTTGTGGGAGGGTCCTGGTGGGAAATGATTGAATCACGGGGGC14.0No Hit
CCCCACCCAAACCTCCCCCAGGGACCTGGGATCTGAAATAAGTAACTCTG14.0No Hit
CCCACCCTCTCCTCCCTGTGTGTAGGCAAGCCCAGAGGCCAGAGCTGGGC14.0No Hit
GGAGGCTGGGAGAATCATGAGGCTGTGGACCTGGAGAGAGCGGCTGAGCT14.0No Hit
AGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGGCCCGCA14.0No Hit
CCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGGCGCCGCCGCCCCGGCC14.0No Hit
CCCAAAGTAAACATATTTAGAAACATAATTCTCCCTCTGGTGAGGTTGTG14.0No Hit
GCCCGCTCCACTGCCTCGCCTGAAGAGTGGGAAGCCAGCGCTCCGCTCCC14.0No Hit
CTTGTTAATATTTTTTACCATTCTGTAGGCTGTCTGTTTACACTGTTGGT14.0No Hit
AACTGCTGTCTGGGACTGAAACACTGGAATTCTAGGCTGTACGGAGAGCC14.0No Hit
CCCACCTGGCACTGTCCCCGGAGCGGGACGCGGGCCGCCCGCGCGCGGGC14.0No Hit
GTCAGCGGCAGGTCCTCCTGAGGCAGCGTGTCCCCTGCGTTCTTCCCCAG14.0No Hit
GCCATGGGAGGGCTGGAGATGCTGTGAGGTGTAGGATCCTCTGGCACGGC14.0No Hit
GGGGCATATCATCTGCTCTGAGGCAAACCAGGCCCTGAGGCAGCGCAGGC14.0No Hit
CCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGT14.0No Hit
CAGAGATATCTGGAGCACCACCACCCACTGGCGCCCGCTCAGTGGGGTCA14.0No Hit
TGGCACTGTCCCCGGAGCGGGTCGCGGGCCGCCGCGCCCGGGGGGGGGGG14.0No Hit
ACCGGCATAACTATTGAGAATATCAGCACCAGGAACATGTTCCACAATTA14.0No Hit
ACCAAGACAATTCTTCTTCCAATGTGGCTCAGGGAAGCCAAAAGATTGGA14.0No Hit
GTCAAACTGCCACCATGACTGACACAGCAGGGTCACGTTCTCTCCTGAGG14.0No Hit
CCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTTTT14.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)