FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-026_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-026_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTAAAACACTCCAAAAAATATATGCAAAGCAATATCCACCAGTTTACC110.0No Hit
TTTAATTGCTATTTCTTTCAGTGGATTTGGTTTTACTCTGCTTTTTGCTT110.0No Hit
CTGAGAATCATTGAAATAAAGGAAATATTACGGAAAAGAGATTAGTTTCC110.0No Hit
CAAACTACTAACATAAAATAGATTAACAAAAAAAAATTAAACAAAAAATT110.0No Hit
GTCAGGACCGTCAGCTGCAGGTCTGTTGGCGTTTGCTGGAGGTCCACTCC110.0No Hit
GTTTAAGCTCCACTCTGTGTGTGGCATTTTGTTATGGCAGCCCTAGCAAA110.0No Hit
CTTGGACACGTCCTCCAGCTTCTGGATGACCTTGGCCTTCAGGGCAGCCA110.0No Hit
GTCCATGAACACCCAAGATTGTGTCCAGAGTTGGTTCCATCCAGTGGGTT110.0No Hit
GTTGTGAAGAAACTTTAAAGAAAGATTAGAATATAATAACAAATCCAAAT110.0No Hit
GCTCCTCTGCCGACTGCTTCAGCCGCTCGGCCTCTTCCACCTGCCGCCGG110.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)