FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-025_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-025_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACATTTCTTCTTGCATCCACCTGCCGGTGGGCCTGGGTTTCCTGATTC110.0No Hit
CGCTCTCCGAATTCAACGAGCCAGTGCTTCCCGTGTTAAAGGTTACTGAA110.0No Hit
CCAGGCATATTCCATGCACACACACACACCCCCCCGATACAGATAATGGG110.0No Hit
TCCTGCTTCAGGCTCCTTTTCTTACGGCCCCCCAACCCCACCCCTTCCCC110.0No Hit
CTCCCCTTCTTCAAAGAGCTGGCAACAATTGAGAGGCAGAAACAATAGTT110.0No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT110.0No Hit
TCTAATGAAAAATGAATCACTACACAGGTCTTCAGAATTTGTATTTCATT110.0No Hit
CGGCGGTTTGCTCTTTCTCTGATTCTTCCTTGGTCACTGAGCCCTGCAGG110.0No Hit
CCACCGTCCTGCTGTCTATATCAACCAACACCTTTTCTGGGGTCTGATGA110.0No Hit
GGTTAACAATAGTTATGGTAATTGGTCCATCAAAGGCATTGGGCAGGTCT110.0No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)