FastQCFastQC Report
Mon 8 Jan 2024
HNTFHDMXY_n01_MHC-004_r2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTFHDMXY_n01_MHC-004_r2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATCCAAGCGTTAGGAGCATCCCTCATCGCCAGTTCTGCTTACCAAAA32.2388059701492535No Hit
GTCTCCTACACATATTTAGCTTTATGTGAAATGTATCACACGTATTAGTG21.4925373134328357No Hit
GCCCTTTTTACCTATTGGGAGTTTGAGAATAGGTCAAGGAAAACGATTTC21.4925373134328357No Hit
CTCCAATCTCAAAGAACACGACTCGGCATGAAAAATTCCAATGAATAAAT21.4925373134328357No Hit
CATGTATATTGAATTTGGTTGGATAAAGCTTTCCAAGCGATTTGGTTCAA10.7462686567164178No Hit
CTAAGCCTTTGGTGTCCCAGCAACTATTGCAGTAGGCAGTGATCTGGGAG10.7462686567164178No Hit
CCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGG10.7462686567164178No Hit
GCGCTTGATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAAT10.7462686567164178No Hit
TCCTACACATATTTAGCTTTATGTGAAATGTATCACACGTATTAGTGCTC10.7462686567164178No Hit
GCCCCATTTAGAAACTTCTGTGCTTAGAACATACTTGGAAAACTCTAAGT10.7462686567164178No Hit
CCCCTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGA10.7462686567164178No Hit
TGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGTGATGTCC10.7462686567164178No Hit
TAGAGAGGAGGGAGCTGACACACAGGCACCCAGGACACCCTGCTTCAGGG10.7462686567164178No Hit
AGTCAACAGAACAGGTCAGTGCCACCCACATACCCTGCACTAGTTCAGTG10.7462686567164178No Hit
CCTGCTTGACATTCCTATTCTTTATTTCTGAGTCTCGCTCTATTGCCCAG10.7462686567164178No Hit
CCACGATTTTCTACTCATAAAAAGATTCTAAAAAAAAAATAATTTTTTTC10.7462686567164178No Hit
AATATTTGGAGGTGGGGAGAATCTTGCTGGTAGTGTTCAGGAACTCAGTG10.7462686567164178No Hit
ATTCTATAAATTTAATTTAATATGAGTGAAATACAATTAGAGATATTAAT10.7462686567164178No Hit
GGCATTCATGGAATAATTCAACGACAATTCCGTCGAAAGGTTTGCACCAA10.7462686567164178No Hit
GGCAGAGTTATTAGGCTCAGAGAAAAACAGAAAGAAAGGCATAGGGCACA10.7462686567164178No Hit
CCCACCTGGCACTGTCCCCGGAGCGGGTCGCGGGCGGGCGGGGCCGCGCC10.7462686567164178No Hit
CCCCGTTACCCGTCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGC10.7462686567164178No Hit
CGCCCCTAAACGTGATTGAAATGAACGATTTGCACGTCAGTATCAACTCG10.7462686567164178No Hit
GGGACAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCA10.7462686567164178No Hit
CTGGCTATGTCTCCATAGAAATTGGGAGAAAGATAAGAAACAAGTTTCTT10.7462686567164178No Hit
GCCCACTTGGAGTTATTTTATTTAATATGAGTGAAATACAAATTGAGTTA10.7462686567164178No Hit
GTCTGACGTGGGGTAGAAAACTTGAAGAGACAGGCAAAAGAAAAGTTGCT10.7462686567164178No Hit
CCCTGTGGTAACTTTTCAGACACCTCTATATGCACAGTAGTAAGTAATTT10.7462686567164178No Hit
TAAGAAACTCATAATACTATTGGCACAGGAATATCAACCTGTTTCCCTTT10.7462686567164178No Hit
CCCTTGTCCGTTTCAGTTCTGAGTTAACATTATAGGTATCAAATTAAAGT10.7462686567164178No Hit
GCTCTTCCGTCAATTCTTTTAACTTTCTCGCTTGCGCGAATACTCGCCCC10.7462686567164178No Hit
AAAGGAGTTCATTTATATATATGTTACCATCTAAGAAACTCATAATACTA10.7462686567164178No Hit
CGGTCTCCTACACATATTTAGCTTTATGTGAAATGTATCACACGTATTAG10.7462686567164178No Hit
CGTCCATCAAGACCACATCTTTCTTTAAGGCCTTTATTGCGAAAAATTGA10.7462686567164178No Hit
CCAATCTCAAAGAACACGACTCGGCATGAAAAATTCCAATGAATAAATTA10.7462686567164178No Hit
GCACCTTATCCAAGCGTTAGGAGCATCCCTCATCGCCAGTTCTGCTTACC10.7462686567164178No Hit
CTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGG10.7462686567164178No Hit
CCGTTACCCGTCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTG10.7462686567164178No Hit
CCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCC10.7462686567164178No Hit
AATAGATAAGTAAAACAAATTTAAAAGTAGTGGTATTTAACTGTCGTAAA10.7462686567164178No Hit
GTGACGGGCGAGGGGGCGGCCGCCGTTCCGGCCGCGCCCCGTTTCCCAGG10.7462686567164178No Hit
GTTCGGTGTCAGAGGCACTGGCCAAAGCTTCTTCCAGTTCTGGGTCAAGG10.7462686567164178No Hit
CCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGGGCG10.7462686567164178No Hit
CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGC10.7462686567164178No Hit
GTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGGGCCCCCCC10.7462686567164178No Hit
TAATTATAATCTAAGACATTTCCCGTGGGCCGTGCTACTATACCTGGAAA10.7462686567164178No Hit
TGAGTGTAAAGCCTATGTAAAGGAGTTCATTTATATATATGTTACCATCT10.7462686567164178No Hit
GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATT10.7462686567164178No Hit
CAAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAAATTGGGAGAAAGA10.7462686567164178No Hit
CGGTATTGTATGCAAAGTGGGGATTTAATAAAAATTAAACACCACACAAA10.7462686567164178No Hit
TATAAAGGTAAAGTGCAAAGAAAACGCACCCCGAGTGTAAAGCCTATGTA10.7462686567164178No Hit
CTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCATAGCCATGTTAGGC10.7462686567164178No Hit
CTCCTACACATATTTAGCTTTATGTGAAATGTATCACACGTATTAGTGCT10.7462686567164178No Hit
GCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGA10.7462686567164178No Hit
ACCAGACTTGCCCTCCAATTGTTACTCTGGGAAGGTTTTAAGCCAATTGT10.7462686567164178No Hit
GTTTGTGCAATTCTTTTTTGTTGTTAAAGAACTATTGCCTAGCTCACAGC10.7462686567164178No Hit
GAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCGAGGGGCCC10.7462686567164178No Hit
GCCCGCCGGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGG10.7462686567164178No Hit
CGGGGAAGAAACCCCTTTTAAACACTTTTCAGCTATCCCTTAGGAGCGGC10.7462686567164178No Hit
CAATAGTTTAATAAGTCACTTCTGGCTTGTCTAGAGAGCAATCCTAGCAC10.7462686567164178No Hit
CGCCCTTTTTACCTATTGGGAGTTTGAGAATAGGTCAAGGAAAACGATTT10.7462686567164178No Hit
GGGCAGGGACGTAGTCAGCACAATCTGATGAATCATGCTTACTAGGCATT10.7462686567164178No Hit
ATCGATTCTTTGAAATTCAACTACGAGCGTTTTAACTGCAACAATTTTAA10.7462686567164178No Hit
ATGCACCAAACTTTGATGGCCCAGCAGCAGAGGGTCAACCAGGACAGAAG10.7462686567164178No Hit
TCGGGTCCTACCAAATATGCTCGTACTCAATAAAGCATAATTGCTTACCG10.7462686567164178No Hit
CTTCCAGCCTGAACTCCCGCTTGTAATGCCTCCCACGAAACCGGCAGCTT10.7462686567164178No Hit
CCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTC10.7462686567164178No Hit
GCCTGGGCAACAGAGCAAGACCCTGTCTTTATTGGGAAAAAAAGAAAAAA10.7462686567164178No Hit
AGCCGACATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGC10.7462686567164178No Hit
GCCGTTCCCTCCTTTTTTCAAGGATAGTCCTTACCACTTCGGATAATTCA10.7462686567164178No Hit
GGAACTTGGTGATGATATCGTGGGTGAGTTCATTTTCCAGGTGCTGTAGT10.7462686567164178No Hit
TTCAGAGTTGGAGAAATCCTTAGGGTAAAAAAACCCACATACCTGGTGTC10.7462686567164178No Hit
ATCCGTTCCATCTTAACGATTTCAGGTACTATTTAATTGCTCATTCCTGA10.7462686567164178No Hit
GTCCACTTCATTATCAAATTCAATTTTATCTTCTTGATGGTTGTTTTTCT10.7462686567164178No Hit
ACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAAGG10.7462686567164178No Hit
CAGATGAAGAGGAGTGTGATGATCACCAAGAGTGGCAGGCCCAGGAGGAC10.7462686567164178No Hit
TCTCCTTCCTTTAAAAGATAGGATTTACGGTTTTTCCAGAAAAAAAAGAA10.7462686567164178No Hit
CTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTT10.7462686567164178No Hit
CCTTGCCATCCTCCAGGTATTCTAGGTACTTCTGCTGCAGCAGCAAAAAC10.7462686567164178No Hit
GCAGTTAAAAGTGGTGTGCTTCCTTCTTGTGATTTGTTTTTAGAATCATT10.7462686567164178No Hit
GCCAACTACGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAG10.7462686567164178No Hit
CGCTCATACAAGTATTAAGAGTATAGCAAAGCAAAATGGAATCAGAAGAA10.7462686567164178No Hit
ATTCCAATTACAAAACCAAAAATTGGCCTTGCATTGTTATTTCTTGTCAC10.7462686567164178No Hit
GCTGCTGTTGCTGGTTTTGAGGGAGATGTGAACTCTGGGATGGTTGTGTT10.7462686567164178No Hit
GAAAGAGCAATCCAAATGGAAAGAAAGAAACCACATAGCTCAAGATCGGA10.7462686567164178No Hit
GATTTACTTCATTTTCGTTATTTGTTGTCAATGTAGAAGTAATTGTTTCT10.7462686567164178No Hit
CACGATTTTCTACTCATAAAAAGATTCTAAAAAAAAAATAATTTTTTTCT10.7462686567164178No Hit
GGCCTATGTAAAGGAGTTCATTTATATATATGTTACCATCTAAGAAACTC10.7462686567164178No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGC10.7462686567164178No Hit
GTATTCTGTTGGGATGGGGTAAGACCCGTGAGCGACGGTCAAAGGTCTGT10.7462686567164178No Hit
CCCACCTGGCACTGTCCCCGGAGCGGGTAGGCGGGGCCCGGGGCGGGGGC10.7462686567164178No Hit
CGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCT10.7462686567164178No Hit
CCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCG10.7462686567164178No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA10.7462686567164178No Hit
GTGATTCCCAAAGGATTTCCATATTGCAGTTGCTCCACCCAAATTCAGAG10.7462686567164178No Hit
GCCCGGCGCGAGATTTACACCCTCTCCCCCGGATTTTCAAGGGCCAGCGA10.7462686567164178No Hit
CAGCACGGACGGAGGCAATAAATACTGATGGCCAGGCGGGGCTCCTGGCT10.7462686567164178No Hit
CTTAAACTTCCTTGTGTTAGACACACAATGTTCCTCTAAGAAGCTTTTCA10.7462686567164178No Hit
CACGTATTTCGCTTCAACACAAACCCCACGATTTTCTACTCATAAAAAGA10.7462686567164178No Hit
CTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTC10.7462686567164178No Hit
GTTGTTTCCTTTATCTACCTTGATCAAGGCACCGCTTTTTAGATGACCCT10.7462686567164178No Hit
CTGGATTTCAAAATACTACTTATCTTTGTCTTCTTTTATAATACCCAATA10.7462686567164178No Hit
ATCTCGATTACTGCACAGAGCTCAACCCCCACGTGCTAATGTTTGGGACA10.7462686567164178No Hit
TCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGC10.7462686567164178No Hit
CCCCGTTACCCGTCATAGCCATGTTAGGCCAATACAGATCGGAAGAGCAC10.7462686567164178No Hit
GCTGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAAT10.7462686567164178No Hit
GGCTGCTAATATCATCCTGCTCTGCAACATCATCATATACTTCTTGGTCA10.7462686567164178No Hit
TCTCCCCTTATCCATAAAATGGGCACAATGACAGCACCCACAGGGTTTTG10.7462686567164178No Hit
CTCTAAGAAGCTTTTCAATCAAGCAAGTACATTCTTAAAAGAAGAGAGAA10.7462686567164178No Hit
CATCACGATATATATTGATAAAGATTACCTACGCCTTTCGGCGGAGGAAA10.7462686567164178No Hit
ACCTGCCGGGGCTTCTCCCGCCTTTTTTCCCGGCGGCGGGAGAAGTAGAT10.7462686567164178No Hit
GGGCCTTTCACCCTCTATGGGGAAGCATTCCTGCTCACTTTGCTCAAATT10.7462686567164178No Hit
GCTTCTTTTGTTGCTTCTTTAGAAGTACTTGCTTCTTTTGTTGCTTCTTT10.7462686567164178No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG10.7462686567164178No Hit
GGGGGCAACAGCTAGATGGGTAGGGGGGGACCCACTCAAGGACATACTGC10.7462686567164178No Hit
GGCCTCCCAAAGTGCTGGGATTACAGGCGGGAGCCGCCGCGCCTGGCCCA10.7462686567164178No Hit
CCCCGTTCAAGAAATTTTTTGAATTGAGTTCAACGAACCTCTTCTCCAAG10.7462686567164178No Hit
CTCGCCATCAGCATGATGAACTCCTCGAAGCTCAGCTGCTTGTCTGCATT10.7462686567164178No Hit
CTACAGTTTGTGCAATTCTTTTTTGTTGTTAAAGAACTATTGCCTAGCTC10.7462686567164178No Hit
CCCTTCTCCACTTCAGTCTTCAAAGTTCTCATTTGAATAGTTGCTACTTC10.7462686567164178No Hit
CTTTGTCAGTTGTACCTGCATGTTCATCGTCTATTACTCCATCTCCTTTT10.7462686567164178No Hit
CACCATTCCAATTACAAAACCAAAAATTGGACTTCCATTGTAATTTCTTG10.7462686567164178No Hit
ATAATAATATCCTTTCTGTCCACTGTTTGATTTGTCATAATTTTCTTTGT10.7462686567164178No Hit
AGAGAGAGCGCGGGGTGGGGAGGGAGCGAGCGGCGCGCGCGGGGTGGGGC10.7462686567164178No Hit
CTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACT10.7462686567164178No Hit
CAACAGACTTAGCTTCGCAACACTGGTTTGTCAACCAATTGCTGTACCAA10.7462686567164178No Hit
GTACAAAGGGCAGGGACGTAGTCAGCACAATCTGATGAATCATGCTTACT10.7462686567164178No Hit
CTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCAT10.7462686567164178No Hit
CCCATCACGATATATATTGATAAAGATTACCTACGCCTTTCGGCGGAGGA10.7462686567164178No Hit

[WARN]Adapter Content

Adapter graph