[2023-11-04 08:40:07,673] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-11-04 08:40:07,673] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-11-04 08:40:07,673] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-04 08:40:07,676] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-11-04 08:40:07,676] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-11-04 08:40:07,676] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-11-04 08:40:07,863] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-04 08:40:07,863] multiqc [INFO ] This is MultiQC v1.9 [2023-11-04 08:40:07,863] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-11-04 08:40:07,863] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/3c/e5fc8bf922eea362b160e564e0cf74/merged [2023-11-04 08:40:07,863] multiqc [INFO ] Template : default [2023-11-04 08:40:07,863] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-11-04 08:40:07,863] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/3c/e5fc8bf922eea362b160e564e0cf74/merged [2023-11-04 08:40:07,864] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-11-04 08:40:07,864] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-39620470/tmprteh30m1 [2023-11-04 08:40:08,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-001_fastqc.html [2023-11-04 08:40:08,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-001_fastqc.html [2023-11-04 08:40:08,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2023-11-04 08:40:17,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-091_fastqc.html [2023-11-04 08:40:17,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-092_fastqc.html [2023-11-04 08:40:17,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-092_fastqc.html [2023-11-04 08:40:17,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-001_fastqc.html [2023-11-04 08:40:17,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-001_fastqc.html [2023-11-04 08:40:17,519] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-002_fastqc.html [2023-11-04 08:40:17,526] multiqc 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[2023-11-04 08:40:21,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-011_fastqc.html [2023-11-04 08:40:21,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-011_fastqc.html [2023-11-04 08:40:21,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-012_fastqc.html [2023-11-04 08:40:21,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-012_fastqc.html [2023-11-04 08:40:21,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-013_fastqc.html [2023-11-04 08:40:21,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-013_fastqc.html [2023-11-04 08:40:21,934] multiqc 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[2023-11-04 08:40:22,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-010_fastqc.html [2023-11-04 08:40:23,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-011_fastqc.html [2023-11-04 08:40:23,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-011_fastqc.html [2023-11-04 08:40:23,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-012_fastqc.html [2023-11-04 08:40:23,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-012_fastqc.html [2023-11-04 08:40:23,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-013_fastqc.html [2023-11-04 08:40:23,238] multiqc 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[2023-11-04 08:40:28,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-078_fastqc.html [2023-11-04 08:40:28,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-079_fastqc.html [2023-11-04 08:40:28,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-079_fastqc.html [2023-11-04 08:40:29,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-080_fastqc.html [2023-11-04 08:40:29,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-080_fastqc.html [2023-11-04 08:40:29,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-081_fastqc.html [2023-11-04 08:40:29,146] multiqc 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HMLTGDMXY_n02_MTH-001_fastqc.html [2023-11-04 08:40:30,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-002_fastqc.html [2023-11-04 08:40:30,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-002_fastqc.html [2023-11-04 08:40:30,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-003_fastqc.html [2023-11-04 08:40:30,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-003_fastqc.html [2023-11-04 08:40:30,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-004_fastqc.html [2023-11-04 08:40:30,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-004_fastqc.html [2023-11-04 08:40:30,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-005_fastqc.html [2023-11-04 08:40:30,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-005_fastqc.html [2023-11-04 08:40:30,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-006_fastqc.html [2023-11-04 08:40:30,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-006_fastqc.html [2023-11-04 08:40:30,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-007_fastqc.html [2023-11-04 08:40:30,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-007_fastqc.html [2023-11-04 08:40:30,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-008_fastqc.html [2023-11-04 08:40:30,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-008_fastqc.html [2023-11-04 08:40:30,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-009_fastqc.html [2023-11-04 08:40:30,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-009_fastqc.html [2023-11-04 08:40:30,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-010_fastqc.html [2023-11-04 08:40:30,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-010_fastqc.html [2023-11-04 08:40:30,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-011_fastqc.html [2023-11-04 08:40:30,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-011_fastqc.html [2023-11-04 08:40:31,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-012_fastqc.html [2023-11-04 08:40:31,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-012_fastqc.html [2023-11-04 08:40:31,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-013_fastqc.html [2023-11-04 08:40:31,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-013_fastqc.html [2023-11-04 08:40:31,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-014_fastqc.html [2023-11-04 08:40:31,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-014_fastqc.html [2023-11-04 08:40:31,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-015_fastqc.html [2023-11-04 08:40:31,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-015_fastqc.html [2023-11-04 08:40:31,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-016_fastqc.html [2023-11-04 08:40:31,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-016_fastqc.html [2023-11-04 08:40:31,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-017_fastqc.html [2023-11-04 08:40:31,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-017_fastqc.html [2023-11-04 08:40:31,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-018_fastqc.html [2023-11-04 08:40:31,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-018_fastqc.html [2023-11-04 08:40:31,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-019_fastqc.html [2023-11-04 08:40:31,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-019_fastqc.html [2023-11-04 08:40:31,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-020_fastqc.html [2023-11-04 08:40:31,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-020_fastqc.html [2023-11-04 08:40:31,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-021_fastqc.html [2023-11-04 08:40:31,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-021_fastqc.html [2023-11-04 08:40:31,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-022_fastqc.html [2023-11-04 08:40:31,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-022_fastqc.html [2023-11-04 08:40:31,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-023_fastqc.html [2023-11-04 08:40:31,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-023_fastqc.html [2023-11-04 08:40:31,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-024_fastqc.html [2023-11-04 08:40:32,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-024_fastqc.html [2023-11-04 08:40:32,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-025_fastqc.html [2023-11-04 08:40:32,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-025_fastqc.html [2023-11-04 08:40:32,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-026_fastqc.html [2023-11-04 08:40:32,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-026_fastqc.html [2023-11-04 08:40:32,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-027_fastqc.html [2023-11-04 08:40:32,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-027_fastqc.html [2023-11-04 08:40:32,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-028_fastqc.html [2023-11-04 08:40:32,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-028_fastqc.html [2023-11-04 08:40:32,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-029_fastqc.html [2023-11-04 08:40:32,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-029_fastqc.html [2023-11-04 08:40:32,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-030_fastqc.html [2023-11-04 08:40:32,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-030_fastqc.html [2023-11-04 08:40:32,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-031_fastqc.html [2023-11-04 08:40:32,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-031_fastqc.html [2023-11-04 08:40:32,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-032_fastqc.html [2023-11-04 08:40:32,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-032_fastqc.html [2023-11-04 08:40:32,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-033_fastqc.html [2023-11-04 08:40:32,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-033_fastqc.html [2023-11-04 08:40:32,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-034_fastqc.html [2023-11-04 08:40:32,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-034_fastqc.html [2023-11-04 08:40:32,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-035_fastqc.html [2023-11-04 08:40:32,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-035_fastqc.html [2023-11-04 08:40:32,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-036_fastqc.html [2023-11-04 08:40:32,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-036_fastqc.html [2023-11-04 08:40:33,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-037_fastqc.html [2023-11-04 08:40:33,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-037_fastqc.html [2023-11-04 08:40:33,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-038_fastqc.html [2023-11-04 08:40:33,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-038_fastqc.html [2023-11-04 08:40:33,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-039_fastqc.html [2023-11-04 08:40:33,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-039_fastqc.html [2023-11-04 08:40:33,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-040_fastqc.html [2023-11-04 08:40:33,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-040_fastqc.html [2023-11-04 08:40:33,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_undetermined_fastqc.html [2023-11-04 08:40:33,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_undetermined_fastqc.html [2023-11-04 08:40:34,206] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-04 08:40:34,208] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-04 08:40:34,288] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 149 samples (table) [2023-11-04 08:40:34,290] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-11-04 08:40:34,300] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-11-04 08:40:34,304] multiqc [DEBUG ] No samples found: conpair [2023-11-04 08:40:34,309] multiqc [DEBUG ] No samples found: peddy [2023-11-04 08:40:34,313] multiqc [DEBUG ] No samples found: somalier [2023-11-04 08:40:34,318] multiqc [DEBUG ] No samples found: methylQA [2023-11-04 08:40:34,326] multiqc [DEBUG ] No samples found: mosdepth [2023-11-04 08:40:34,330] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-04 08:40:34,334] multiqc [DEBUG ] No samples found: qualimap [2023-11-04 08:40:34,339] multiqc [DEBUG ] No samples found: preseq [2023-11-04 08:40:34,343] multiqc [DEBUG ] No samples found: quast [2023-11-04 08:40:34,348] multiqc [DEBUG ] No samples found: qorts [2023-11-04 08:40:34,353] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-04 08:40:34,357] multiqc [DEBUG ] No samples found: rockhopper [2023-11-04 08:40:34,362] multiqc [DEBUG ] No samples found: rsem [2023-11-04 08:40:34,372] multiqc [DEBUG ] No samples found: rseqc [2023-11-04 08:40:34,376] multiqc [DEBUG ] No samples found: busco [2023-11-04 08:40:34,380] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-04 08:40:34,384] multiqc [DEBUG ] No samples found: disambiguate [2023-11-04 08:40:34,389] multiqc [DEBUG ] No samples found: supernova [2023-11-04 08:40:34,400] multiqc [DEBUG ] No samples found: deeptools [2023-11-04 08:40:34,405] multiqc [DEBUG ] No samples found: sargasso [2023-11-04 08:40:34,409] multiqc [DEBUG ] No samples found: verifybamid [2023-11-04 08:40:34,414] multiqc [DEBUG ] No samples found: mirtrace [2023-11-04 08:40:34,419] multiqc [DEBUG ] No samples found: happy [2023-11-04 08:40:34,423] multiqc [DEBUG ] No samples found: mirtop [2023-11-04 08:40:34,429] multiqc [DEBUG ] No samples found: homer [2023-11-04 08:40:34,434] multiqc [DEBUG ] No samples found: macs2 [2023-11-04 08:40:34,438] multiqc [DEBUG ] No samples found: theta2 [2023-11-04 08:40:34,442] multiqc [DEBUG ] No samples found: snpeff [2023-11-04 08:40:34,449] multiqc [DEBUG ] No samples found: gatk [2023-11-04 08:40:34,453] multiqc [DEBUG ] No samples found: htseq [2023-11-04 08:40:34,459] multiqc [DEBUG ] No samples found: bcftools [2023-11-04 08:40:34,463] multiqc [DEBUG ] No samples found: featureCounts [2023-11-04 08:40:34,469] multiqc [DEBUG ] No samples found: fgbio [2023-11-04 08:40:34,481] multiqc [DEBUG ] No samples found: dragen [2023-11-04 08:40:34,486] multiqc [DEBUG ] No samples found: dedup [2023-11-04 08:40:34,490] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-04 08:40:34,510] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-04 08:40:34,515] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-04 08:40:34,517] multiqc [DEBUG ] No samples found: picard [2023-11-04 08:40:34,521] multiqc [DEBUG ] No samples found: prokka [2023-11-04 08:40:34,525] multiqc [DEBUG ] No samples found: samblaster [2023-11-04 08:40:34,533] multiqc [DEBUG ] No samples found: samtools [2023-11-04 08:40:34,537] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-04 08:40:34,542] multiqc [DEBUG ] No samples found: bamtools [2023-11-04 08:40:34,546] multiqc [DEBUG ] No samples found: jellyfish [2023-11-04 08:40:34,553] multiqc [DEBUG ] No samples found: vcftools [2023-11-04 08:40:34,557] multiqc [DEBUG ] No samples found: longranger [2023-11-04 08:40:34,561] multiqc [DEBUG ] No samples found: stacks [2023-11-04 08:40:34,566] multiqc [DEBUG ] No samples found: varscan2 [2023-11-04 08:40:34,577] multiqc [DEBUG ] No samples found: bbmap [2023-11-04 08:40:34,581] multiqc [DEBUG ] No samples found: bismark [2023-11-04 08:40:34,586] multiqc [DEBUG ] No samples found: biscuit [2023-11-04 08:40:34,590] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-04 08:40:34,595] multiqc [DEBUG ] No samples found: hicup [2023-11-04 08:40:34,600] multiqc [DEBUG ] No samples found: hicpro [2023-11-04 08:40:34,604] multiqc [DEBUG ] No samples found: salmon [2023-11-04 08:40:34,608] multiqc [DEBUG ] No samples found: kallisto [2023-11-04 08:40:34,613] multiqc [DEBUG ] No samples found: slamdunk [2023-11-04 08:40:34,617] multiqc [DEBUG ] No samples found: star [2023-11-04 08:40:34,622] multiqc [DEBUG ] No samples found: hisat2 [2023-11-04 08:40:34,626] multiqc [DEBUG ] No samples found: tophat [2023-11-04 08:40:34,631] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-04 08:40:34,635] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-04 08:40:34,640] multiqc [DEBUG ] No samples found: snpsplit [2023-11-04 08:40:34,644] multiqc [DEBUG ] No samples found: kat [2023-11-04 08:40:34,648] multiqc [DEBUG ] No samples found: leehom [2023-11-04 08:40:34,652] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-04 08:40:34,657] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-04 08:40:34,661] multiqc [DEBUG ] No samples found: cutadapt [2023-11-04 08:40:34,665] multiqc [DEBUG ] No samples found: flexbar [2023-11-04 08:40:34,669] multiqc [DEBUG ] No samples found: kaiju [2023-11-04 08:40:34,673] multiqc [DEBUG ] No samples found: kraken [2023-11-04 08:40:34,677] multiqc [DEBUG ] No samples found: malt [2023-11-04 08:40:34,681] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-04 08:40:34,685] multiqc [DEBUG ] No samples found: sickle [2023-11-04 08:40:34,690] multiqc [DEBUG ] No samples found: skewer [2023-11-04 08:40:34,693] multiqc [DEBUG ] No samples found: sortmerna [2023-11-04 08:40:34,698] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-04 08:40:34,702] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-04 08:40:34,706] multiqc [DEBUG ] No samples found: afterqc [2023-11-04 08:40:34,711] multiqc [DEBUG ] No samples found: fastp [2023-11-04 08:41:19,500] multiqc.modules.fastqc.fastqc [INFO ] Found 298 reports [2023-11-04 08:41:51,128] multiqc [DEBUG ] No samples found: pycoqc [2023-11-04 08:41:51,132] multiqc [DEBUG ] No samples found: minionqc [2023-11-04 08:41:51,137] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-04 08:41:51,141] multiqc [DEBUG ] No samples found: clusterflow [2023-11-04 08:41:51,146] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-04 08:41:51,150] multiqc [DEBUG ] No samples found: interop [2023-11-04 08:41:51,155] multiqc [DEBUG ] No samples found: ivar [2023-11-04 08:41:51,159] multiqc [DEBUG ] No samples found: flash [2023-11-04 08:41:51,164] multiqc [DEBUG ] No samples found: seqyclean [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-11-04 08:41:51,164] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-11-04 08:41:51,165] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-11-04 08:41:51,512] multiqc [INFO ] Compressing plot data [2023-11-04 08:41:51,641] multiqc [INFO ] Report : multiqc_report.html [2023-11-04 08:41:51,642] multiqc [INFO ] Data : multiqc_data [2023-11-04 08:41:51,642] multiqc [DEBUG ] Moving data file from '/state/partition1/job-39620470/tmprteh30m1/multiqc_data' to '/vast/gencore/GENEFLOW/work/3c/e5fc8bf922eea362b160e564e0cf74/merged/multiqc_data' [2023-11-04 08:41:51,904] multiqc [INFO ] MultiQC complete