[2023-08-19 00:00:45,610] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-19 00:00:45,610] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-08-19 00:00:45,611] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-19 00:00:45,613] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-08-19 00:00:45,614] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-08-19 00:00:45,614] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-19 00:00:45,776] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-19 00:00:45,776] multiqc [INFO ] This is MultiQC v1.9 [2023-08-19 00:00:45,776] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-19 00:00:45,776] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/e9/02601c4723096ec872a0c067ab6362/merged [2023-08-19 00:00:45,776] multiqc [INFO ] Template : default [2023-08-19 00:00:45,776] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-08-19 00:00:45,776] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/e9/02601c4723096ec872a0c067ab6362/merged [2023-08-19 00:00:45,776] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-08-19 00:00:45,777] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-36658368/tmpahpmjvmu [2023-08-19 00:00:45,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_A1_n_fastqc.html [2023-08-19 00:00:45,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_A1_n_fastqc.html [2023-08-19 00:00:46,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F6_n_fastqc.html [2023-08-19 00:01:37,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F7_n_fastqc.html [2023-08-19 00:01:37,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F7_n_fastqc.html [2023-08-19 00:01:37,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F8_n_fastqc.html [2023-08-19 00:01:37,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F8_n_fastqc.html [2023-08-19 00:01:37,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F9_new_fastqc.html [2023-08-19 00:01:37,775] multiqc [DEBUG ] File ignored 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HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G12_n_fastqc.html [2023-08-19 00:01:38,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G12_n_fastqc.html [2023-08-19 00:01:38,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G1_n_fastqc.html [2023-08-19 00:01:38,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G1_n_fastqc.html [2023-08-19 00:01:38,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G2_new_fastqc.html [2023-08-19 00:01:38,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G2_new_fastqc.html [2023-08-19 00:01:38,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G3_n_fastqc.html [2023-08-19 00:01:38,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G3_n_fastqc.html [2023-08-19 00:01:38,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G4_n_fastqc.html [2023-08-19 00:01:38,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G4_n_fastqc.html [2023-08-19 00:01:38,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G5_n_fastqc.html [2023-08-19 00:01:38,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G5_n_fastqc.html [2023-08-19 00:01:38,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G6_n_fastqc.html [2023-08-19 00:01:38,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G6_n_fastqc.html [2023-08-19 00:01:39,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G7_n_fastqc.html [2023-08-19 00:01:39,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G7_n_fastqc.html [2023-08-19 00:01:39,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G8_n_fastqc.html [2023-08-19 00:01:39,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G8_n_fastqc.html [2023-08-19 00:01:39,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G9_n_fastqc.html [2023-08-19 00:01:39,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_G9_n_fastqc.html [2023-08-19 00:01:39,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H10_n_fastqc.html [2023-08-19 00:01:39,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H10_n_fastqc.html [2023-08-19 00:01:39,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H11_n_fastqc.html [2023-08-19 00:01:39,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H11_n_fastqc.html [2023-08-19 00:01:39,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H12_n_fastqc.html [2023-08-19 00:01:39,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H12_n_fastqc.html [2023-08-19 00:01:39,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H1_n_fastqc.html [2023-08-19 00:01:39,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H1_n_fastqc.html [2023-08-19 00:01:39,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H2_new_fastqc.html [2023-08-19 00:01:39,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H2_new_fastqc.html [2023-08-19 00:01:39,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H3_n_fastqc.html [2023-08-19 00:01:39,920] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H3_n_fastqc.html [2023-08-19 00:01:40,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H4_new_fastqc.html [2023-08-19 00:01:40,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H4_new_fastqc.html [2023-08-19 00:01:40,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H5_n_fastqc.html [2023-08-19 00:01:40,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H5_n_fastqc.html [2023-08-19 00:01:40,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H6_n_fastqc.html [2023-08-19 00:01:40,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H6_n_fastqc.html [2023-08-19 00:01:40,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H7_n_fastqc.html [2023-08-19 00:01:40,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H7_n_fastqc.html [2023-08-19 00:01:40,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H8_n_fastqc.html [2023-08-19 00:01:40,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H8_n_fastqc.html [2023-08-19 00:01:40,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H9_new_fastqc.html [2023-08-19 00:01:40,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_H9_new_fastqc.html [2023-08-19 00:01:40,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_undetermined_fastqc.html [2023-08-19 00:01:40,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_undetermined_fastqc.html [2023-08-19 00:01:41,447] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-19 00:01:41,449] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-19 00:01:41,576] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 250 samples (table) [2023-08-19 00:01:41,578] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-08-19 00:01:41,587] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-08-19 00:01:41,594] multiqc [DEBUG ] No samples found: conpair [2023-08-19 00:01:41,600] multiqc [DEBUG ] No samples found: peddy [2023-08-19 00:01:41,607] multiqc [DEBUG ] No samples found: somalier [2023-08-19 00:01:41,613] multiqc [DEBUG ] No samples found: methylQA [2023-08-19 00:01:41,624] multiqc [DEBUG ] No samples found: mosdepth [2023-08-19 00:01:41,629] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-08-19 00:01:41,633] multiqc [DEBUG ] No samples found: qualimap [2023-08-19 00:01:41,639] multiqc [DEBUG ] No samples found: preseq [2023-08-19 00:01:41,645] multiqc [DEBUG ] No samples found: quast [2023-08-19 00:01:41,651] multiqc [DEBUG ] No samples found: qorts [2023-08-19 00:01:41,657] multiqc [DEBUG ] No samples found: rna_seqc [2023-08-19 00:01:41,662] multiqc [DEBUG ] No samples found: rockhopper [2023-08-19 00:01:41,668] multiqc [DEBUG ] No samples found: rsem [2023-08-19 00:01:41,690] multiqc [DEBUG ] No samples found: rseqc [2023-08-19 00:01:41,695] multiqc [DEBUG ] No samples found: busco [2023-08-19 00:01:41,702] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-08-19 00:01:41,708] multiqc [DEBUG ] No samples found: disambiguate [2023-08-19 00:01:41,718] multiqc [DEBUG ] No samples found: supernova [2023-08-19 00:01:41,741] multiqc [DEBUG ] No samples found: deeptools [2023-08-19 00:01:41,749] multiqc [DEBUG ] No samples found: sargasso [2023-08-19 00:01:41,757] multiqc [DEBUG ] No samples found: verifybamid [2023-08-19 00:01:41,765] multiqc [DEBUG ] No samples found: mirtrace [2023-08-19 00:01:41,770] multiqc [DEBUG ] No samples found: happy [2023-08-19 00:01:41,776] multiqc [DEBUG ] No samples found: mirtop [2023-08-19 00:01:41,784] multiqc [DEBUG ] No samples found: homer [2023-08-19 00:01:41,790] multiqc [DEBUG ] No samples found: macs2 [2023-08-19 00:01:41,794] multiqc [DEBUG ] No samples found: theta2 [2023-08-19 00:01:41,800] multiqc [DEBUG ] No samples found: snpeff [2023-08-19 00:01:41,808] multiqc [DEBUG ] No samples found: gatk [2023-08-19 00:01:41,814] multiqc [DEBUG ] No samples found: htseq [2023-08-19 00:01:41,820] multiqc [DEBUG ] No samples found: bcftools [2023-08-19 00:01:41,825] multiqc [DEBUG ] No samples found: featureCounts [2023-08-19 00:01:41,832] multiqc [DEBUG ] No samples found: fgbio [2023-08-19 00:01:41,847] multiqc [DEBUG ] No samples found: dragen [2023-08-19 00:01:41,852] multiqc [DEBUG ] No samples found: dedup [2023-08-19 00:01:41,857] multiqc [DEBUG ] No samples found: damageprofiler [2023-08-19 00:01:41,887] multiqc [DEBUG ] No samples found: biobambam2 [2023-08-19 00:01:41,892] multiqc [DEBUG ] No samples found: mtnucratio [2023-08-19 00:01:41,895] multiqc [DEBUG ] No samples found: picard [2023-08-19 00:01:41,901] multiqc [DEBUG ] No samples found: prokka [2023-08-19 00:01:41,906] multiqc [DEBUG ] No samples found: samblaster [2023-08-19 00:01:41,918] multiqc [DEBUG ] No samples found: samtools [2023-08-19 00:01:41,925] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-08-19 00:01:41,932] multiqc [DEBUG ] No samples found: bamtools [2023-08-19 00:01:41,938] multiqc [DEBUG ] No samples found: jellyfish [2023-08-19 00:01:41,947] multiqc [DEBUG ] No samples found: vcftools [2023-08-19 00:01:41,954] multiqc [DEBUG ] No samples found: longranger [2023-08-19 00:01:41,959] multiqc [DEBUG ] No samples found: stacks [2023-08-19 00:01:41,965] multiqc [DEBUG ] No samples found: varscan2 [2023-08-19 00:01:41,982] multiqc [DEBUG ] No samples found: bbmap [2023-08-19 00:01:41,988] multiqc [DEBUG ] No samples found: bismark [2023-08-19 00:01:41,994] multiqc [DEBUG ] No samples found: biscuit [2023-08-19 00:01:42,000] multiqc [DEBUG ] No samples found: hicexplorer [2023-08-19 00:01:42,006] multiqc [DEBUG ] No samples found: hicup [2023-08-19 00:01:42,011] multiqc [DEBUG ] No samples found: hicpro [2023-08-19 00:01:42,017] multiqc [DEBUG ] No samples found: salmon [2023-08-19 00:01:42,022] multiqc [DEBUG ] No samples found: kallisto [2023-08-19 00:01:42,028] multiqc [DEBUG ] No samples found: slamdunk [2023-08-19 00:01:42,033] multiqc [DEBUG ] No samples found: star [2023-08-19 00:01:42,038] multiqc [DEBUG ] No samples found: hisat2 [2023-08-19 00:01:42,044] multiqc [DEBUG ] No samples found: tophat [2023-08-19 00:01:42,050] multiqc [DEBUG ] No samples found: bowtie2 [2023-08-19 00:01:42,055] multiqc [DEBUG ] No samples found: bowtie1 [2023-08-19 00:01:42,061] multiqc [DEBUG ] No samples found: snpsplit [2023-08-19 00:01:42,066] multiqc [DEBUG ] No samples found: kat [2023-08-19 00:01:42,071] multiqc [DEBUG ] No samples found: leehom [2023-08-19 00:01:42,076] multiqc [DEBUG ] No samples found: adapterRemoval [2023-08-19 00:01:42,081] multiqc [DEBUG ] No samples found: clipandmerge [2023-08-19 00:01:42,087] multiqc [DEBUG ] No samples found: cutadapt [2023-08-19 00:01:42,092] multiqc [DEBUG ] No samples found: flexbar [2023-08-19 00:01:42,098] multiqc [DEBUG ] No samples found: kaiju [2023-08-19 00:01:42,103] multiqc [DEBUG ] No samples found: kraken [2023-08-19 00:01:42,109] multiqc [DEBUG ] No samples found: malt [2023-08-19 00:01:42,115] multiqc [DEBUG ] No samples found: trimmomatic [2023-08-19 00:01:42,120] multiqc [DEBUG ] No samples found: sickle [2023-08-19 00:01:42,126] multiqc [DEBUG ] No samples found: skewer [2023-08-19 00:01:42,131] multiqc [DEBUG ] No samples found: sortmerna [2023-08-19 00:01:42,135] multiqc [DEBUG ] No samples found: biobloomtools [2023-08-19 00:01:42,140] multiqc [DEBUG ] No samples found: fastq_screen [2023-08-19 00:01:42,145] multiqc [DEBUG ] No samples found: afterqc [2023-08-19 00:01:42,151] multiqc [DEBUG ] No samples found: fastp [2023-08-19 00:02:40,277] multiqc.modules.fastqc.fastqc [INFO ] Found 500 reports [2023-08-19 00:03:36,208] multiqc [DEBUG ] No samples found: pycoqc [2023-08-19 00:03:36,214] multiqc [DEBUG ] No samples found: minionqc [2023-08-19 00:03:36,220] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-08-19 00:03:36,226] multiqc [DEBUG ] No samples found: clusterflow [2023-08-19 00:03:36,232] multiqc [DEBUG ] No samples found: bcl2fastq [2023-08-19 00:03:36,238] multiqc [DEBUG ] No samples found: interop [2023-08-19 00:03:36,244] multiqc [DEBUG ] No samples found: ivar [2023-08-19 00:03:36,249] multiqc [DEBUG ] No samples found: flash [2023-08-19 00:03:36,254] multiqc [DEBUG ] No samples found: seqyclean [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,254] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-08-19 00:03:36,255] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-08-19 00:03:36,260] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 500 samples [2023-08-19 00:03:36,263] multiqc [INFO ] Compressing plot data [2023-08-19 00:03:36,614] multiqc [INFO ] Report : multiqc_report.html [2023-08-19 00:03:36,614] multiqc [INFO ] Data : multiqc_data [2023-08-19 00:03:36,614] multiqc [DEBUG ] Moving data file from '/state/partition1/job-36658368/tmpahpmjvmu/multiqc_data' to '/vast/gencore/GENEFLOW/work/e9/02601c4723096ec872a0c067ab6362/merged/multiqc_data' [2023-08-19 00:03:36,952] multiqc [INFO ] MultiQC complete