[2023-09-28 13:49:33,475] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-09-28 13:49:33,475] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-09-28 13:49:33,476] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-09-28 13:49:33,478] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-09-28 13:49:33,478] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-09-28 13:49:33,479] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-09-28 13:49:33,686] multiqc [WARNING] MultiQC Version v1.16 now available! [2023-09-28 13:49:33,686] multiqc [INFO ] This is MultiQC v1.9 [2023-09-28 13:49:33,686] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-09-28 13:49:33,686] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/2e/007a02efa0fafb07da577f3b9f1aa7/merged [2023-09-28 13:49:33,686] multiqc [INFO ] Template : default [2023-09-28 13:49:33,686] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-09-28 13:49:33,686] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/2e/007a02efa0fafb07da577f3b9f1aa7/merged [2023-09-28 13:49:33,687] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-09-28 13:49:33,687] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-38223000/tmpg43618q8 [2023-09-28 13:49:33,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp01_fastqc.html [2023-09-28 13:49:33,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp01_fastqc.html [2023-09-28 13:49:34,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp12_fastqc.html [2023-09-28 13:49:40,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp13_fastqc.html [2023-09-28 13:49:40,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp13_fastqc.html [2023-09-28 13:49:40,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp14_fastqc.html [2023-09-28 13:49:40,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp14_fastqc.html [2023-09-28 13:49:40,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp15_fastqc.html [2023-09-28 13:49:40,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp15_fastqc.html [2023-09-28 13:49:40,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp16_fastqc.html [2023-09-28 13:49:40,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp16_fastqc.html [2023-09-28 13:49:40,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp17_fastqc.html [2023-09-28 13:49:40,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp17_fastqc.html [2023-09-28 13:49:40,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp18_fastqc.html [2023-09-28 13:49:40,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp18_fastqc.html [2023-09-28 13:49:40,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl01_fastqc.html [2023-09-28 13:49:40,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl01_fastqc.html [2023-09-28 13:49:40,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl02_fastqc.html [2023-09-28 13:49:40,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl02_fastqc.html [2023-09-28 13:49:40,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl03_fastqc.html [2023-09-28 13:49:40,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl03_fastqc.html [2023-09-28 13:49:40,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl04_fastqc.html [2023-09-28 13:49:40,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl04_fastqc.html [2023-09-28 13:49:40,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl05_fastqc.html [2023-09-28 13:49:41,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl05_fastqc.html [2023-09-28 13:49:41,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl06_fastqc.html [2023-09-28 13:49:41,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl06_fastqc.html [2023-09-28 13:49:41,179] multiqc [DEBUG 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exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl10_fastqc.html [2023-09-28 13:49:41,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl10_fastqc.html [2023-09-28 13:49:41,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl11_fastqc.html [2023-09-28 13:49:41,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl11_fastqc.html [2023-09-28 13:49:41,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl12_fastqc.html [2023-09-28 13:49:41,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl12_fastqc.html [2023-09-28 13:49:41,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl13_fastqc.html [2023-09-28 13:49:41,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl13_fastqc.html [2023-09-28 13:49:41,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl14_fastqc.html [2023-09-28 13:49:41,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl14_fastqc.html [2023-09-28 13:49:41,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl15_fastqc.html [2023-09-28 13:49:41,919] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl15_fastqc.html [2023-09-28 13:49:42,022] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl16_fastqc.html [2023-09-28 13:49:42,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl16_fastqc.html [2023-09-28 13:49:42,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl17_fastqc.html [2023-09-28 13:49:42,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl17_fastqc.html [2023-09-28 13:49:42,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl18_fastqc.html [2023-09-28 13:49:42,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl18_fastqc.html [2023-09-28 13:49:42,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS01_fastqc.html [2023-09-28 13:49:42,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS01_fastqc.html [2023-09-28 13:49:42,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS02_fastqc.html [2023-09-28 13:49:42,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS02_fastqc.html [2023-09-28 13:49:42,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS03_fastqc.html [2023-09-28 13:49:42,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS03_fastqc.html [2023-09-28 13:49:42,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS04_fastqc.html [2023-09-28 13:49:42,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS04_fastqc.html [2023-09-28 13:49:42,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS05_fastqc.html [2023-09-28 13:49:42,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS05_fastqc.html [2023-09-28 13:49:42,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS06_fastqc.html [2023-09-28 13:49:42,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS06_fastqc.html [2023-09-28 13:49:42,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS07_fastqc.html [2023-09-28 13:49:42,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS07_fastqc.html [2023-09-28 13:49:42,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS08_fastqc.html [2023-09-28 13:49:42,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS08_fastqc.html [2023-09-28 13:49:43,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS09_fastqc.html [2023-09-28 13:49:43,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS09_fastqc.html [2023-09-28 13:49:43,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS10_fastqc.html [2023-09-28 13:49:43,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS10_fastqc.html [2023-09-28 13:49:43,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS11_fastqc.html [2023-09-28 13:49:43,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS11_fastqc.html [2023-09-28 13:49:43,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS12_fastqc.html [2023-09-28 13:49:43,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS12_fastqc.html [2023-09-28 13:49:43,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS13_fastqc.html [2023-09-28 13:49:43,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS13_fastqc.html [2023-09-28 13:49:43,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS14_fastqc.html [2023-09-28 13:49:43,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS14_fastqc.html [2023-09-28 13:49:43,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS15_fastqc.html [2023-09-28 13:49:43,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS15_fastqc.html [2023-09-28 13:49:43,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS16_fastqc.html [2023-09-28 13:49:43,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS16_fastqc.html [2023-09-28 13:49:43,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS17_fastqc.html [2023-09-28 13:49:43,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS17_fastqc.html [2023-09-28 13:49:43,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS18_fastqc.html [2023-09-28 13:49:43,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS18_fastqc.html [2023-09-28 13:49:43,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_undetermined_fastqc.html [2023-09-28 13:49:43,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_undetermined_fastqc.html [2023-09-28 13:49:44,955] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-09-28 13:49:44,958] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-09-28 13:49:44,995] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 55 samples (table) [2023-09-28 13:49:44,997] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-09-28 13:49:45,007] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-09-28 13:49:45,015] multiqc [DEBUG ] No samples found: conpair [2023-09-28 13:49:45,027] multiqc [DEBUG ] No samples found: peddy [2023-09-28 13:49:45,043] multiqc [DEBUG ] No samples found: somalier [2023-09-28 13:49:45,059] multiqc [DEBUG ] No samples found: methylQA [2023-09-28 13:49:45,098] multiqc [DEBUG ] No samples found: mosdepth [2023-09-28 13:49:45,109] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-09-28 13:49:45,134] multiqc [DEBUG ] No samples found: qualimap [2023-09-28 13:49:45,152] multiqc [DEBUG ] No samples found: preseq [2023-09-28 13:49:45,169] multiqc [DEBUG ] No samples found: quast [2023-09-28 13:49:45,192] multiqc [DEBUG ] No samples found: qorts [2023-09-28 13:49:45,211] multiqc [DEBUG ] No samples found: rna_seqc [2023-09-28 13:49:45,237] multiqc [DEBUG ] No samples found: rockhopper [2023-09-28 13:49:45,255] multiqc [DEBUG ] No samples found: rsem [2023-09-28 13:49:45,318] multiqc [DEBUG ] No samples found: rseqc [2023-09-28 13:49:45,330] multiqc [DEBUG ] No samples found: busco [2023-09-28 13:49:45,347] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-09-28 13:49:45,361] multiqc [DEBUG ] No samples found: disambiguate [2023-09-28 13:49:45,379] multiqc [DEBUG ] No samples found: supernova [2023-09-28 13:49:45,446] multiqc [DEBUG ] No samples found: deeptools [2023-09-28 13:49:45,468] multiqc [DEBUG ] No samples found: sargasso [2023-09-28 13:49:45,488] multiqc [DEBUG ] No samples found: verifybamid [2023-09-28 13:49:45,507] multiqc [DEBUG ] No samples found: mirtrace [2023-09-28 13:49:45,527] multiqc [DEBUG ] No samples found: happy [2023-09-28 13:49:45,553] multiqc [DEBUG ] No samples found: mirtop [2023-09-28 13:49:45,584] multiqc [DEBUG ] No samples found: homer [2023-09-28 13:49:45,605] multiqc [DEBUG ] No samples found: macs2 [2023-09-28 13:49:45,614] multiqc [DEBUG ] No samples found: theta2 [2023-09-28 13:49:45,636] multiqc [DEBUG ] No samples found: snpeff [2023-09-28 13:49:45,659] multiqc [DEBUG ] No samples found: gatk [2023-09-28 13:49:45,670] multiqc [DEBUG ] No samples found: htseq [2023-09-28 13:49:45,697] multiqc [DEBUG ] No samples found: bcftools [2023-09-28 13:49:45,719] multiqc [DEBUG ] No samples found: featureCounts [2023-09-28 13:49:45,759] multiqc [DEBUG ] No samples found: fgbio [2023-09-28 13:49:45,848] multiqc [DEBUG ] No samples found: dragen [2023-09-28 13:49:45,865] multiqc [DEBUG ] No samples found: dedup [2023-09-28 13:49:45,883] multiqc [DEBUG ] No samples found: damageprofiler [2023-09-28 13:49:46,064] multiqc [DEBUG ] No samples found: biobambam2 [2023-09-28 13:49:46,077] multiqc [DEBUG ] No samples found: mtnucratio [2023-09-28 13:49:46,079] multiqc [DEBUG ] No samples found: picard [2023-09-28 13:49:46,096] multiqc [DEBUG ] No samples found: prokka [2023-09-28 13:49:46,107] multiqc [DEBUG ] No samples found: samblaster [2023-09-28 13:49:46,189] multiqc [DEBUG ] No samples found: samtools [2023-09-28 13:49:46,208] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-09-28 13:49:46,234] multiqc [DEBUG ] No samples found: bamtools [2023-09-28 13:49:46,256] multiqc [DEBUG ] No samples found: jellyfish [2023-09-28 13:49:46,300] multiqc [DEBUG ] No samples found: vcftools [2023-09-28 13:49:46,350] multiqc [DEBUG ] No samples found: longranger [2023-09-28 13:49:46,368] multiqc [DEBUG ] No samples found: stacks [2023-09-28 13:49:46,393] multiqc [DEBUG ] No samples found: varscan2 [2023-09-28 13:49:46,471] multiqc [DEBUG ] No samples found: bbmap [2023-09-28 13:49:46,484] multiqc [DEBUG ] No samples found: bismark [2023-09-28 13:49:46,500] multiqc [DEBUG ] No samples found: biscuit [2023-09-28 13:49:46,537] multiqc [DEBUG ] No samples found: hicexplorer [2023-09-28 13:49:46,563] multiqc [DEBUG ] No samples found: hicup [2023-09-28 13:49:46,578] multiqc [DEBUG ] No samples found: hicpro [2023-09-28 13:49:46,592] multiqc [DEBUG ] No samples found: salmon [2023-09-28 13:49:46,621] multiqc [DEBUG ] No samples found: kallisto [2023-09-28 13:49:46,646] multiqc [DEBUG ] No samples found: slamdunk [2023-09-28 13:49:46,656] multiqc [DEBUG ] No samples found: star [2023-09-28 13:49:46,678] multiqc [DEBUG ] No samples found: hisat2 [2023-09-28 13:49:46,695] multiqc [DEBUG ] No samples found: tophat [2023-09-28 13:49:46,704] multiqc [DEBUG ] No samples found: bowtie2 [2023-09-28 13:49:46,731] multiqc [DEBUG ] No samples found: bowtie1 [2023-09-28 13:49:46,752] multiqc [DEBUG ] No samples found: snpsplit [2023-09-28 13:49:46,764] multiqc [DEBUG ] No samples found: kat [2023-09-28 13:49:46,776] multiqc [DEBUG ] No samples found: leehom [2023-09-28 13:49:46,795] multiqc [DEBUG ] No samples found: adapterRemoval [2023-09-28 13:49:46,808] multiqc [DEBUG ] No samples found: clipandmerge [2023-09-28 13:49:46,818] multiqc [DEBUG ] No samples found: cutadapt [2023-09-28 13:49:46,826] multiqc [DEBUG ] No samples found: flexbar [2023-09-28 13:49:46,833] multiqc [DEBUG ] No samples found: kaiju [2023-09-28 13:49:46,840] multiqc [DEBUG ] No samples found: kraken [2023-09-28 13:49:46,857] multiqc [DEBUG ] No samples found: malt [2023-09-28 13:49:46,872] multiqc [DEBUG ] No samples found: trimmomatic [2023-09-28 13:49:46,887] multiqc [DEBUG ] No samples found: sickle [2023-09-28 13:49:46,899] multiqc [DEBUG ] No samples found: skewer [2023-09-28 13:49:46,909] multiqc [DEBUG ] No samples found: sortmerna [2023-09-28 13:49:46,920] multiqc [DEBUG ] No samples found: biobloomtools [2023-09-28 13:49:46,932] multiqc [DEBUG ] No samples found: fastq_screen [2023-09-28 13:49:46,940] multiqc [DEBUG ] No samples found: afterqc [2023-09-28 13:49:46,947] multiqc [DEBUG ] No samples found: fastp [2023-09-28 13:49:53,032] multiqc.modules.fastqc.fastqc [INFO ] Found 110 reports [2023-09-28 13:50:10,279] multiqc [DEBUG ] No samples found: pycoqc [2023-09-28 13:50:10,297] multiqc [DEBUG ] No samples found: minionqc [2023-09-28 13:50:10,323] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-09-28 13:50:10,341] multiqc [DEBUG ] No samples found: clusterflow [2023-09-28 13:50:10,353] multiqc [DEBUG ] No samples found: bcl2fastq [2023-09-28 13:50:10,374] multiqc [DEBUG ] No samples found: interop [2023-09-28 13:50:10,392] multiqc [DEBUG ] No samples found: ivar [2023-09-28 13:50:10,414] multiqc [DEBUG ] No samples found: flash [2023-09-28 13:50:10,445] multiqc [DEBUG ] No samples found: seqyclean [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,445] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-09-28 13:50:10,446] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-09-28 13:50:10,575] multiqc [INFO ] Compressing plot data [2023-09-28 13:50:10,741] multiqc [INFO ] Report : multiqc_report.html [2023-09-28 13:50:10,741] multiqc [INFO ] Data : multiqc_data [2023-09-28 13:50:10,741] multiqc [DEBUG ] Moving data file from '/state/partition1/job-38223000/tmpg43618q8/multiqc_data' to '/vast/gencore/GENEFLOW/work/2e/007a02efa0fafb07da577f3b9f1aa7/merged/multiqc_data' [2023-09-28 13:50:11,445] multiqc [INFO ] MultiQC complete