Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage basic_statistics per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content avg_sequence_length per_base_sequence_quality per_sequence_quality_scores per_tile_sequence_quality HL553DRX3_n01_S1_D0_452_BCell HL553DRX3_n01_S1_D0_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S1_D0_452_GEX HL553DRX3_n01_S1_D0_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S1_D0_452_SP HL553DRX3_n01_S1_D0_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S1_D0_452_TCell HL553DRX3_n01_S1_D0_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S2_D3_452_BCell HL553DRX3_n01_S2_D3_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S2_D3_452_GEX HL553DRX3_n01_S2_D3_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S2_D3_452_SP HL553DRX3_n01_S2_D3_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S2_D3_452_TCell HL553DRX3_n01_S2_D3_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S3_D7_452_BCell HL553DRX3_n01_S3_D7_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S3_D7_452_GEX HL553DRX3_n01_S3_D7_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S3_D7_452_SP HL553DRX3_n01_S3_D7_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S3_D7_452_TCell HL553DRX3_n01_S3_D7_452_TCell.fastq.gz Conventional base calls Sanger / Illumina 1.9 8.0 0.0 26.0 38.0 100.0 pass fail fail pass pass pass fail pass 26.0 pass pass HL553DRX3_n01_S4_D28_452_BCell HL553DRX3_n01_S4_D28_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S4_D28_452_GEX HL553DRX3_n01_S4_D28_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S4_D28_452_SP HL553DRX3_n01_S4_D28_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_S4_D28_452_TCell HL553DRX3_n01_S4_D28_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n01_undetermined HL553DRX3_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 1940705349.0 0.0 26.0 50.0 20.48153451831724 pass pass pass pass pass fail warn pass 26.0 pass pass pass HL553DRX3_n02_S1_D0_452_BCell HL553DRX3_n02_S1_D0_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S1_D0_452_GEX HL553DRX3_n02_S1_D0_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S1_D0_452_SP HL553DRX3_n02_S1_D0_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S1_D0_452_TCell HL553DRX3_n02_S1_D0_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S2_D3_452_BCell HL553DRX3_n02_S2_D3_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S2_D3_452_GEX HL553DRX3_n02_S2_D3_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S2_D3_452_SP HL553DRX3_n02_S2_D3_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S2_D3_452_TCell HL553DRX3_n02_S2_D3_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S3_D7_452_BCell HL553DRX3_n02_S3_D7_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S3_D7_452_GEX HL553DRX3_n02_S3_D7_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S3_D7_452_SP HL553DRX3_n02_S3_D7_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S3_D7_452_TCell HL553DRX3_n02_S3_D7_452_TCell.fastq.gz Conventional base calls Sanger / Illumina 1.9 8.0 0.0 90.0 37.0 100.0 pass fail fail pass pass pass fail pass 90.0 pass pass HL553DRX3_n02_S4_D28_452_BCell HL553DRX3_n02_S4_D28_452_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S4_D28_452_GEX HL553DRX3_n02_S4_D28_452_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S4_D28_452_SP HL553DRX3_n02_S4_D28_452_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_S4_D28_452_TCell HL553DRX3_n02_S4_D28_452_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HL553DRX3_n02_undetermined HL553DRX3_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 1940705349.0 0.0 90.0 49.0 21.57938451241131 pass warn warn pass pass fail fail fail 90.0 pass pass pass