[2023-09-29 20:04:58,107] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-09-29 20:04:58,107] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-09-29 20:04:58,108] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-09-29 20:04:58,110] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-09-29 20:04:58,110] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-09-29 20:04:58,111] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-09-29 20:04:58,254] multiqc [WARNING] MultiQC Version v1.16 now available! [2023-09-29 20:04:58,254] multiqc [INFO ] This is MultiQC v1.9 [2023-09-29 20:04:58,254] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-09-29 20:04:58,254] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/fa/a6f8e904bc2c7eef148c6af92ce51c/merged [2023-09-29 20:04:58,254] multiqc [INFO ] Template : default [2023-09-29 20:04:58,254] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-09-29 20:04:58,254] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/fa/a6f8e904bc2c7eef148c6af92ce51c/merged [2023-09-29 20:04:58,255] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-09-29 20:04:58,255] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-38382305/tmpm6p2yw1m [2023-09-29 20:04:58,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n01_S1_D0_452_BCell_fastqc.html [2023-09-29 20:04:58,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n01_S1_D0_452_BCell_fastqc.html [2023-09-29 20:04:58,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize 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File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_BCell_fastqc.html [2023-09-29 20:04:59,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_BCell_fastqc.html [2023-09-29 20:04:59,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_GEX_fastqc.html [2023-09-29 20:04:59,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_GEX_fastqc.html [2023-09-29 20:05:00,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_SP_fastqc.html [2023-09-29 20:05:00,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_SP_fastqc.html [2023-09-29 20:05:00,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_TCell_fastqc.html [2023-09-29 20:05:00,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S3_D7_452_TCell_fastqc.html [2023-09-29 20:05:00,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_BCell_fastqc.html [2023-09-29 20:05:00,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_BCell_fastqc.html [2023-09-29 20:05:00,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_GEX_fastqc.html [2023-09-29 20:05:00,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_GEX_fastqc.html [2023-09-29 20:05:00,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_SP_fastqc.html [2023-09-29 20:05:00,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_SP_fastqc.html [2023-09-29 20:05:00,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_TCell_fastqc.html [2023-09-29 20:05:00,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_S4_D28_452_TCell_fastqc.html [2023-09-29 20:05:00,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL553DRX3_n02_undetermined_fastqc.html [2023-09-29 20:05:00,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL553DRX3_n02_undetermined_fastqc.html [2023-09-29 20:05:00,918] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-09-29 20:05:00,920] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-09-29 20:05:00,936] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 17 samples (table) [2023-09-29 20:05:00,938] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-09-29 20:05:00,949] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-09-29 20:05:00,953] multiqc [DEBUG ] No samples found: conpair [2023-09-29 20:05:00,957] multiqc [DEBUG ] No samples found: peddy [2023-09-29 20:05:00,961] multiqc [DEBUG ] No samples found: somalier [2023-09-29 20:05:00,965] multiqc [DEBUG ] No samples found: methylQA [2023-09-29 20:05:00,971] multiqc [DEBUG ] No samples found: mosdepth [2023-09-29 20:05:00,974] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-09-29 20:05:00,977] multiqc [DEBUG ] No samples found: qualimap [2023-09-29 20:05:00,981] multiqc [DEBUG ] No samples found: preseq [2023-09-29 20:05:00,985] multiqc [DEBUG ] No samples found: quast [2023-09-29 20:05:00,991] multiqc [DEBUG ] No samples found: qorts [2023-09-29 20:05:00,997] multiqc [DEBUG ] No samples found: rna_seqc [2023-09-29 20:05:01,001] multiqc [DEBUG ] No samples found: rockhopper [2023-09-29 20:05:01,007] multiqc [DEBUG ] No samples found: rsem [2023-09-29 20:05:01,016] multiqc [DEBUG ] No samples found: rseqc [2023-09-29 20:05:01,019] multiqc [DEBUG ] No samples found: busco [2023-09-29 20:05:01,023] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-09-29 20:05:01,027] multiqc [DEBUG ] No samples found: disambiguate [2023-09-29 20:05:01,033] multiqc [DEBUG ] No samples found: supernova [2023-09-29 20:05:01,046] multiqc [DEBUG ] No samples found: deeptools [2023-09-29 20:05:01,050] multiqc [DEBUG ] No samples found: sargasso [2023-09-29 20:05:01,055] multiqc [DEBUG ] No samples found: verifybamid [2023-09-29 20:05:01,059] multiqc [DEBUG ] No samples found: mirtrace [2023-09-29 20:05:01,064] multiqc [DEBUG ] No samples found: happy [2023-09-29 20:05:01,068] multiqc [DEBUG ] No samples found: mirtop [2023-09-29 20:05:01,073] multiqc [DEBUG ] No samples found: homer [2023-09-29 20:05:01,076] multiqc [DEBUG ] No samples found: macs2 [2023-09-29 20:05:01,079] multiqc [DEBUG ] No samples found: theta2 [2023-09-29 20:05:01,083] multiqc [DEBUG ] No samples found: snpeff [2023-09-29 20:05:01,089] multiqc [DEBUG ] No samples found: gatk [2023-09-29 20:05:01,092] multiqc [DEBUG ] No samples found: htseq [2023-09-29 20:05:01,097] multiqc [DEBUG ] No samples found: bcftools [2023-09-29 20:05:01,101] multiqc [DEBUG ] No samples found: featureCounts [2023-09-29 20:05:01,105] multiqc [DEBUG ] No samples found: fgbio [2023-09-29 20:05:01,115] multiqc [DEBUG ] No samples found: dragen [2023-09-29 20:05:01,119] multiqc [DEBUG ] No samples found: dedup [2023-09-29 20:05:01,123] multiqc [DEBUG ] No samples found: damageprofiler [2023-09-29 20:05:01,139] multiqc [DEBUG ] No samples found: biobambam2 [2023-09-29 20:05:01,144] multiqc [DEBUG ] No samples found: mtnucratio [2023-09-29 20:05:01,146] multiqc [DEBUG ] No samples found: picard [2023-09-29 20:05:01,150] multiqc [DEBUG ] No samples found: prokka [2023-09-29 20:05:01,154] multiqc [DEBUG ] No samples found: samblaster [2023-09-29 20:05:01,160] multiqc [DEBUG ] No samples found: samtools [2023-09-29 20:05:01,164] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-09-29 20:05:01,168] multiqc [DEBUG ] No samples found: bamtools [2023-09-29 20:05:01,171] multiqc [DEBUG ] No samples found: jellyfish [2023-09-29 20:05:01,175] multiqc [DEBUG ] No samples found: vcftools [2023-09-29 20:05:01,179] multiqc [DEBUG ] No samples found: longranger [2023-09-29 20:05:01,183] multiqc [DEBUG ] No samples found: stacks [2023-09-29 20:05:01,187] multiqc [DEBUG ] No samples found: varscan2 [2023-09-29 20:05:01,196] multiqc [DEBUG ] No samples found: bbmap [2023-09-29 20:05:01,200] multiqc [DEBUG ] No samples found: bismark [2023-09-29 20:05:01,204] multiqc [DEBUG ] No samples found: biscuit [2023-09-29 20:05:01,208] multiqc [DEBUG ] No samples found: hicexplorer [2023-09-29 20:05:01,212] multiqc [DEBUG ] No samples found: hicup [2023-09-29 20:05:01,216] multiqc [DEBUG ] No samples found: hicpro [2023-09-29 20:05:01,219] multiqc [DEBUG ] No samples found: salmon [2023-09-29 20:05:01,223] multiqc [DEBUG ] No samples found: kallisto [2023-09-29 20:05:01,227] multiqc [DEBUG ] No samples found: slamdunk [2023-09-29 20:05:01,232] multiqc [DEBUG ] No samples found: star [2023-09-29 20:05:01,236] multiqc [DEBUG ] No samples found: hisat2 [2023-09-29 20:05:01,239] multiqc [DEBUG ] No samples found: tophat [2023-09-29 20:05:01,243] multiqc [DEBUG ] No samples found: bowtie2 [2023-09-29 20:05:01,247] multiqc [DEBUG ] No samples found: bowtie1 [2023-09-29 20:05:01,251] multiqc [DEBUG ] No samples found: snpsplit [2023-09-29 20:05:01,254] multiqc [DEBUG ] No samples found: kat [2023-09-29 20:05:01,256] multiqc [DEBUG ] No samples found: leehom [2023-09-29 20:05:01,261] multiqc [DEBUG ] No samples found: adapterRemoval [2023-09-29 20:05:01,264] multiqc [DEBUG ] No samples found: clipandmerge [2023-09-29 20:05:01,267] multiqc [DEBUG ] No samples found: cutadapt [2023-09-29 20:05:01,270] multiqc [DEBUG ] No samples found: flexbar [2023-09-29 20:05:01,274] multiqc [DEBUG ] No samples found: kaiju [2023-09-29 20:05:01,278] multiqc [DEBUG ] No samples found: kraken [2023-09-29 20:05:01,282] multiqc [DEBUG ] No samples found: malt [2023-09-29 20:05:01,285] multiqc [DEBUG ] No samples found: trimmomatic [2023-09-29 20:05:01,289] multiqc [DEBUG ] No samples found: sickle [2023-09-29 20:05:01,293] multiqc [DEBUG ] No samples found: skewer [2023-09-29 20:05:01,296] multiqc [DEBUG ] No samples found: sortmerna [2023-09-29 20:05:01,299] multiqc [DEBUG ] No samples found: biobloomtools [2023-09-29 20:05:01,303] multiqc [DEBUG ] No samples found: fastq_screen [2023-09-29 20:05:01,307] multiqc [DEBUG ] No samples found: afterqc [2023-09-29 20:05:01,311] multiqc [DEBUG ] No samples found: fastp [2023-09-29 20:05:01,773] multiqc.modules.fastqc.fastqc [INFO ] Found 34 reports [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S1_D0_452_BCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S1_D0_452_GEX' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S1_D0_452_SP' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S1_D0_452_TCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S2_D3_452_BCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S2_D3_452_GEX' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S2_D3_452_SP' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S2_D3_452_TCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S3_D7_452_BCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S3_D7_452_GEX' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S3_D7_452_SP' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S4_D28_452_BCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S4_D28_452_GEX' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S4_D28_452_SP' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n01_S4_D28_452_TCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S1_D0_452_BCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S1_D0_452_GEX' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S1_D0_452_SP' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S1_D0_452_TCell' [2023-09-29 20:05:01,774] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S2_D3_452_BCell' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S2_D3_452_GEX' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S2_D3_452_SP' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S2_D3_452_TCell' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S3_D7_452_BCell' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S3_D7_452_GEX' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S3_D7_452_SP' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S4_D28_452_BCell' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S4_D28_452_GEX' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S4_D28_452_SP' [2023-09-29 20:05:01,775] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HL553DRX3_n02_S4_D28_452_TCell' [2023-09-29 20:05:01,845] multiqc [DEBUG ] No samples found: pycoqc [2023-09-29 20:05:01,849] multiqc [DEBUG ] No samples found: minionqc [2023-09-29 20:05:01,853] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-09-29 20:05:01,857] multiqc [DEBUG ] No samples found: clusterflow [2023-09-29 20:05:01,861] multiqc [DEBUG ] No samples found: bcl2fastq [2023-09-29 20:05:01,865] multiqc [DEBUG ] No samples found: interop [2023-09-29 20:05:01,869] multiqc [DEBUG ] No samples found: ivar [2023-09-29 20:05:01,873] multiqc [DEBUG ] No samples found: flash [2023-09-29 20:05:01,877] multiqc [DEBUG ] No samples found: seqyclean [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-09-29 20:05:01,877] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-09-29 20:05:01,878] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-09-29 20:05:01,878] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-09-29 20:05:01,918] multiqc [INFO ] Compressing plot data [2023-09-29 20:05:02,117] multiqc [INFO ] Report : multiqc_report.html [2023-09-29 20:05:02,117] multiqc [INFO ] Data : multiqc_data [2023-09-29 20:05:02,117] multiqc [DEBUG ] Moving data file from '/state/partition1/job-38382305/tmpm6p2yw1m/multiqc_data' to '/vast/gencore/GENEFLOW/work/fa/a6f8e904bc2c7eef148c6af92ce51c/merged/multiqc_data' [2023-09-29 20:05:02,339] multiqc [INFO ] MultiQC complete