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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.9

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2023-08-11, 04:44 based on data in: /vast/gencore/GENEFLOW/work/26/7ea073e91bb74890dbd877a356b75f/merged

Demultiplexing Report

Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ¹⁴⁸/₁₄₈ rows and ²/₂ columns.

Library	Total Read Count	Portion (%)
undetermined_library	110573140	19.5
AtbZIP1_ampCol-B_ad1	2409606	0.4
AtbZIP2_ampCol-B_ad1	2242612	0.4
AtbZIP4_ampCol-B_ad1	1691325	0.3
AtbZIP5_ampCol-B_ad1	2227249	0.4
AtbZIP6_ampCol-B_ad1	1721699	0.3
AtbZIP7_ampCol-B_ad1	652055	0.1
AtbZIP9_ampCol-B_ad1	634218	0.1
AtbZIP10_ampCol-B_ad1	2171389	0.4
AtbZIP11_ampCol-B_ad1	3937787	0.7
AtbZIP12_ampCol-B_ad1	4161436	0.7
AtbZIP13_ampCol-B_ad1	5641058	1.0
AtbZIP14_ampCol-B_ad1	5216471	0.9
AtbZIP15_ampCol-B_ad1	4573863	0.8
AtbZIP16_ampCol-B_ad1	7119459	1.3
AtbZIP17_ampCol-B_ad1	3989365	0.7
AtbZIP18_ampCol-B_ad1	5492481	1.0
AtbZIP19_ampCol-B_ad1	3007681	0.5
AtbZIP20_ampCol-B_ad1	4019374	0.7
AtbZIP21_ampCol-B_ad1	6186592	1.1
AtbZIP22_ampCol-B_ad1	917084	0.2
AtbZIP23_ampCol-B_ad1	4412253	0.8
AtbZIP24_ampCol-B_ad1	4450345	0.8
AtbZIP25_ampCol-B_ad1	3284801	0.6
AtbZIP26_ampCol-B_ad1	3503605	0.6
AtbZIP27_ampCol-B_ad1	872405	0.2
AtbZIP28_ampCol-B_ad1	2025760	0.4
AtbZIP30_ampCol-B_ad1	4197384	0.7
AtbZIP31_ampCol-B_ad1	4837479	0.9
AtbZIP33_ampCol-B_ad1	3722062	0.7
AtbZIP34_ampCol-B_ad1	4772893	0.8
AtbZIP35_ampCol-B_ad1	5421558	1.0
AtbZIP36_ampCol-B_ad1	3169654	0.6
AtbZIP37_ampCol-B_ad1	3304129	0.6
AtbZIP38_ampCol-B_ad1	5502501	1.0
AtbZIP39_ampCol-B_ad1	5577703	1.0
AtbZIP40_ampCol-B_ad1	1954697	0.3
AtbZIP41_ampCol-B_ad1	3846152	0.7
AtbZIP56_ampCol-B_ad1	4707037	0.8
AtbZIP62_ampCol-B_ad1	2920224	0.5
pIXHALO_ampCol-B_ad1	2206823	0.4
AtbZIP1_ampCol-B_ad2	3414757	0.6
AtbZIP2_ampCol-B_ad2	3276026	0.6
AtbZIP4_ampCol-B_ad2	5689098	1.0
AtbZIP5_ampCol-B_ad2	1331314	0.2
AtbZIP6_ampCol-B_ad2	1040486	0.2
AtbZIP7_ampCol-B_ad2	1468052	0.3
AtbZIP9_ampCol-B_ad2	2985945	0.5
AtbZIP10_ampCol-B_ad2	1967847	0.3
AtbZIP11_ampCol-B_ad2	6784588	1.2
AtbZIP12_ampCol-B_ad2	3820457	0.7
AtbZIP13_ampCol-B_ad2	2743101	0.5
AtbZIP14_ampCol-B_ad2	5153932	0.9
AtbZIP15_ampCol-B_ad2	6531953	1.1
AtbZIP16_ampCol-B_ad2	5972347	1.1
AtbZIP17_ampCol-B_ad2	5566704	1.0
AtbZIP18_ampCol-B_ad2	5063749	0.9
AtbZIP19_ampCol-B_ad2	18826253	3.3
AtbZIP20_ampCol-B_ad2	10938501	1.9
AtbZIP21_ampCol-B_ad2	13329584	2.3
AtbZIP22_ampCol-B_ad2	9982690	1.8
AtbZIP23_ampCol-B_ad2	17666000	3.1
AtbZIP24_ampCol-B_ad2	13149830	2.3
AtbZIP25_ampCol-B_ad2	9180097	1.6
AtbZIP26_ampCol-B_ad2	19505859	3.4
AtbZIP27_ampCol-B_ad2	11302482	2.0
AtbZIP28_ampCol-B_ad2	12976538	2.3
AtbZIP30_ampCol-B_ad2	11794139	2.1
AtbZIP31_ampCol-B_ad2	10621742	1.9
AtbZIP33_ampCol-B_ad2	16945417	3.0
AtbZIP34_ampCol-B_ad2	13306371	2.3
AtbZIP35_ampCol-B_ad2	11540658	2.0
AtbZIP36_ampCol-B_ad2	9566285	1.7
AtbZIP37_ampCol-B_ad2	3057870	0.5
AtbZIP38_ampCol-B_ad2	5413238	1.0
AtbZIP39_ampCol-B_ad2	7153680	1.3
AtbZIP40_ampCol-B_ad2	1279605	0.2
AtbZIP41_ampCol-B_ad2	4461908	0.8
AtbZIP56_ampCol-B_ad2	3932804	0.7
AtbZIP62_ampCol-B_ad2	4215427	0.7
pIXHALO_ampCol-B_ad2	5749720	1.0
FaLAM_ampCol-B_ad	1756477	0.3
FaWRKY25_ampCol-B_ad	2535004	0.4
FaWRKY45_ampCol-B_ad	1465780	0.3
daplib_ColAmpPoolHm-input_ad1	4057	0.0
daplib_C24AmpPoolHm-input_ad1	1441	0.0
daplib_EriAmpPoolHm-input_ad1	2147	0.0
daplib_CviAmpPoolHm-input_ad1	1123	0.0
daplib_ShaAmpPoolHm-input_ad1	1989	0.0
daplib_KyoAmpPoolHm-input_ad1	919.0	0.0
daplib_LerAmpPoolHm-input_ad1	776.0	0.0
daplib_An1AmpPoolHm-input_ad1	1533	0.0
daplib_ColAmpPoolHm-input_ad2	4417	0.0
daplib_C24AmpPoolHm-input_ad2	1728	0.0
daplib_EriAmpPoolHm-input_ad2	2643	0.0
daplib_CviAmpPoolHm-input_ad2	1469	0.0
daplib_ShaAmpPoolHm-input_ad2	2398	0.0
daplib_KyoAmpPoolHm-input_ad2	1164	0.0
daplib_LerAmpPoolHm-input_ad2	1020	0.0
daplib_An1AmpPoolHm-input_ad2	1911	0.0
daplib_ColAmpPoolHm-input_ad3	3508	0.0
daplib_C24AmpPoolHm-input_ad3	1289	0.0
daplib_EriAmpPoolHm-input_ad3	1800	0.0
daplib_CviAmpPoolHm-input_ad3	1017	0.0
daplib_ShaAmpPoolHm-input_ad3	1732	0.0
daplib_KyoAmpPoolHm-input_ad3	711.0	0.0
daplib_LerAmpPoolHm-input_ad3	724.0	0.0
daplib_An1AmpPoolHm-input_ad3	1358	0.0
daplib_ColAmpPoolHm-input_ad4	3385	0.0
daplib_C24AmpPoolHm-input_ad4	1053	0.0
daplib_EriAmpPoolHm-input_ad4	1502	0.0
daplib_CviAmpPoolHm-input_ad4	856.0	0.0
daplib_ShaAmpPoolHm-input_ad4	1532	0.0
daplib_KyoAmpPoolHm-input_ad4	698.0	0.0
daplib_LerAmpPoolHm-input_ad4	590.0	0.0
daplib_An1AmpPoolHm-input_ad4	1025	0.0
daplib_ColAmpPoolHm-input_ad7	3461	0.0
daplib_C24AmpPoolHm-input_ad7	1234	0.0
daplib_EriAmpPoolHm-input_ad7	1728	0.0
daplib_CviAmpPoolHm-input_ad7	945.0	0.0
daplib_ShaAmpPoolHm-input_ad7	1709	0.0
daplib_KyoAmpPoolHm-input_ad7	767.0	0.0
daplib_LerAmpPoolHm-input_ad7	688.0	0.0
daplib_An1AmpPoolHm-input_ad7	1243	0.0
daplib_ColAmpPoolHm-input_ad8	3111	0.0
daplib_C24AmpPoolHm-input_ad8	1215	0.0
daplib_EriAmpPoolHm-input_ad8	1810	0.0
daplib_CviAmpPoolHm-input_ad8	1088	0.0
daplib_ShaAmpPoolHm-input_ad8	1725	0.0
daplib_KyoAmpPoolHm-input_ad8	854.0	0.0
daplib_LerAmpPoolHm-input_ad8	743.0	0.0
daplib_An1AmpPoolHm-input_ad8	1492	0.0
AtbZIP26_ColAmpPoolHm-B_ad5	11896	0.0
AtbZIP26_C24AmpPoolHm-B_ad5	3772	0.0
AtbZIP26_EriAmpPoolHm-B_ad5	11483	0.0
AtbZIP26_CviAmpPoolHm-B_ad5	5821	0.0
AtbZIP26_ShaAmpPoolHm-B_ad5	7760	0.0
AtbZIP26_KyoAmpPoolHm-B_ad5	4476	0.0
AtbZIP26_LerAmpPoolHm-B_ad5	4408	0.0
AtbZIP26_An1AmpPoolHm-B_ad5	8527	0.0
AtbZIP26_ColAmpPoolHm-B_ad6	20489	0.0
AtbZIP26_C24AmpPoolHm-B_ad6	8580	0.0
AtbZIP26_EriAmpPoolHm-B_ad6	18824	0.0
AtbZIP26_CviAmpPoolHm-B_ad6	9782	0.0
AtbZIP26_ShaAmpPoolHm-B_ad6	14249	0.0
AtbZIP26_KyoAmpPoolHm-B_ad6	7659	0.0
AtbZIP26_LerAmpPoolHm-B_ad6	6947	0.0
AtbZIP26_An1AmpPoolHm-B_ad6	12900	0.0

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Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
4.0	739835072	567974625	19.5	4.1

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

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