FastQCFastQC Report
Fri 8 Sep 2023
HJ5HKDRX3_n01_D_W1_C.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJ5HKDRX3_n01_D_W1_C.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences215039
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATACAGGCAACACGCAGATATAGGTGCGACGTGAACAGTGAGCTG2620.12183836420370259No Hit
GTATATAGAGACAAAATAGAAGAAACCGTTCATAATTTTCTGACCAATGA2520.11718804495928646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)