Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage basic_statistics per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content avg_sequence_length per_base_sequence_quality per_sequence_quality_scores per_tile_sequence_quality HHMVCDRX3_n01_S2_D3_PBMC_BCell HHMVCDRX3_n01_S2_D3_PBMC_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S2_D3_PBMC_GEX HHMVCDRX3_n01_S2_D3_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S2_D3_PBMC_SP HHMVCDRX3_n01_S2_D3_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S2_D3_PBMC_TCell HHMVCDRX3_n01_S2_D3_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S3_D7_PBMC_BCell HHMVCDRX3_n01_S3_D7_PBMC_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S3_D7_PBMC_GEX HHMVCDRX3_n01_S3_D7_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S3_D7_PBMC_SP HHMVCDRX3_n01_S3_D7_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S3_D7_PBMC_TCell HHMVCDRX3_n01_S3_D7_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S4_D28_PBMC_BCell HHMVCDRX3_n01_S4_D28_PBMC_BCell.fastq.gz Conventional base calls Sanger / Illumina 1.9 8.0 0.0 26.0 52.0 100.0 pass fail fail pass pass pass fail pass 26.0 pass pass HHMVCDRX3_n01_S4_D28_PBMC_GEX HHMVCDRX3_n01_S4_D28_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S4_D28_PBMC_SP HHMVCDRX3_n01_S4_D28_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_S4_D28_PBMC_TCell HHMVCDRX3_n01_S4_D28_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n01_undetermined HHMVCDRX3_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 1829611846.0 0.0 26.0 51.0 22.45923091942737 pass pass pass pass pass fail warn pass 26.0 pass pass pass HHMVCDRX3_n02_S2_D3_PBMC_BCell HHMVCDRX3_n02_S2_D3_PBMC_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S2_D3_PBMC_GEX HHMVCDRX3_n02_S2_D3_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S2_D3_PBMC_SP HHMVCDRX3_n02_S2_D3_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S2_D3_PBMC_TCell HHMVCDRX3_n02_S2_D3_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S3_D7_PBMC_BCell HHMVCDRX3_n02_S3_D7_PBMC_BCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S3_D7_PBMC_GEX HHMVCDRX3_n02_S3_D7_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S3_D7_PBMC_SP HHMVCDRX3_n02_S3_D7_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S3_D7_PBMC_TCell HHMVCDRX3_n02_S3_D7_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S4_D28_PBMC_BCell HHMVCDRX3_n02_S4_D28_PBMC_BCell.fastq.gz Conventional base calls Sanger / Illumina 1.9 8.0 0.0 90.0 49.0 100.0 pass fail fail pass pass pass fail pass 90.0 pass pass HHMVCDRX3_n02_S4_D28_PBMC_GEX HHMVCDRX3_n02_S4_D28_PBMC_GEX.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S4_D28_PBMC_SP HHMVCDRX3_n02_S4_D28_PBMC_SP.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_S4_D28_PBMC_TCell HHMVCDRX3_n02_S4_D28_PBMC_TCell.fastq.gz null Illumina 1.5 0.0 0.0 0.0 0.0 100.0 pass pass pass pass pass pass pass warn HHMVCDRX3_n02_undetermined HHMVCDRX3_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 1829611846.0 0.0 90.0 51.0 20.256161423333417 pass pass warn pass pass fail fail warn 90.0 pass pass pass