[2023-08-19 22:55:13,833] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-19 22:55:13,833] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-08-19 22:55:13,834] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-19 22:55:13,836] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-08-19 22:55:13,836] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-08-19 22:55:13,837] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-19 22:55:14,232] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-19 22:55:14,232] multiqc [INFO ] This is MultiQC v1.9 [2023-08-19 22:55:14,232] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-19 22:55:14,232] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/44/f31833849662e879097c34747e75a3/merged [2023-08-19 22:55:14,232] multiqc [INFO ] Template : default [2023-08-19 22:55:14,232] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-08-19 22:55:14,232] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/44/f31833849662e879097c34747e75a3/merged [2023-08-19 22:55:14,233] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-08-19 22:55:14,233] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-36680626/tmp5qythy5w [2023-08-19 22:55:14,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_GEX_fastqc.html [2023-08-19 22:55:14,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_GEX_fastqc.html [2023-08-19 22:55:14,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_SP_fastqc.html [2023-08-19 22:55:14,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_SP_fastqc.html [2023-08-19 22:55:14,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_TCell_fastqc.html [2023-08-19 22:55:14,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S2_D3_PBMC_TCell_fastqc.html [2023-08-19 22:55:14,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_GEX_fastqc.html [2023-08-19 22:55:14,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_GEX_fastqc.html [2023-08-19 22:55:14,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_SP_fastqc.html [2023-08-19 22:55:14,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_SP_fastqc.html [2023-08-19 22:55:14,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_TCell_fastqc.html [2023-08-19 22:55:14,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S3_D7_PBMC_TCell_fastqc.html [2023-08-19 22:55:14,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_BCell_fastqc.html [2023-08-19 22:55:14,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_GEX_fastqc.html [2023-08-19 22:55:14,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_SP_fastqc.html [2023-08-19 22:55:15,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_SP_fastqc.html [2023-08-19 22:55:15,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_S4_D28_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n01_undetermined_fastqc.html [2023-08-19 22:55:15,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n01_undetermined_fastqc.html [2023-08-19 22:55:15,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_SP_fastqc.html [2023-08-19 22:55:15,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_SP_fastqc.html [2023-08-19 22:55:15,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S2_D3_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_SP_fastqc.html [2023-08-19 22:55:15,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_SP_fastqc.html [2023-08-19 22:55:15,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S3_D7_PBMC_TCell_fastqc.html [2023-08-19 22:55:15,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_BCell_fastqc.html [2023-08-19 22:55:15,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_GEX_fastqc.html [2023-08-19 22:55:15,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_GEX_fastqc.html [2023-08-19 22:55:16,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_SP_fastqc.html [2023-08-19 22:55:16,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_SP_fastqc.html [2023-08-19 22:55:16,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_TCell_fastqc.html [2023-08-19 22:55:16,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_S4_D28_PBMC_TCell_fastqc.html [2023-08-19 22:55:16,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHMVCDRX3_n02_undetermined_fastqc.html [2023-08-19 22:55:16,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHMVCDRX3_n02_undetermined_fastqc.html [2023-08-19 22:55:16,794] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-19 22:55:16,796] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-19 22:55:16,812] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 13 samples (table) [2023-08-19 22:55:16,814] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-08-19 22:55:16,824] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-08-19 22:55:16,830] multiqc [DEBUG ] No samples found: conpair [2023-08-19 22:55:16,835] multiqc [DEBUG ] No samples found: peddy [2023-08-19 22:55:16,841] multiqc [DEBUG ] No samples found: somalier [2023-08-19 22:55:16,848] multiqc [DEBUG ] No samples found: methylQA [2023-08-19 22:55:16,859] multiqc [DEBUG ] No samples found: mosdepth [2023-08-19 22:55:16,865] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-08-19 22:55:16,869] multiqc [DEBUG ] No samples found: qualimap [2023-08-19 22:55:16,875] multiqc [DEBUG ] No samples found: preseq [2023-08-19 22:55:16,881] multiqc [DEBUG ] No samples found: quast [2023-08-19 22:55:16,886] multiqc [DEBUG ] No samples found: qorts [2023-08-19 22:55:16,892] multiqc [DEBUG ] No samples found: rna_seqc [2023-08-19 22:55:16,897] multiqc [DEBUG ] No samples found: rockhopper [2023-08-19 22:55:16,903] multiqc [DEBUG ] No samples found: rsem [2023-08-19 22:55:16,916] multiqc [DEBUG ] No samples found: rseqc [2023-08-19 22:55:16,921] multiqc [DEBUG ] No samples found: busco [2023-08-19 22:55:16,927] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-08-19 22:55:16,932] multiqc [DEBUG ] No samples found: disambiguate [2023-08-19 22:55:16,939] multiqc [DEBUG ] No samples found: supernova [2023-08-19 22:55:16,953] multiqc [DEBUG ] No samples found: deeptools [2023-08-19 22:55:16,958] multiqc [DEBUG ] No samples found: sargasso [2023-08-19 22:55:16,964] multiqc [DEBUG ] No samples found: verifybamid [2023-08-19 22:55:16,969] multiqc [DEBUG ] No samples found: mirtrace [2023-08-19 22:55:16,974] multiqc [DEBUG ] No samples found: happy [2023-08-19 22:55:16,979] multiqc [DEBUG ] No samples found: mirtop [2023-08-19 22:55:16,987] multiqc [DEBUG ] No samples found: homer [2023-08-19 22:55:16,992] multiqc [DEBUG ] No samples found: macs2 [2023-08-19 22:55:16,997] multiqc [DEBUG ] No samples found: theta2 [2023-08-19 22:55:17,003] multiqc [DEBUG ] No samples found: snpeff [2023-08-19 22:55:17,011] multiqc [DEBUG ] No samples found: gatk [2023-08-19 22:55:17,018] multiqc [DEBUG ] No samples found: htseq [2023-08-19 22:55:17,024] multiqc [DEBUG ] No samples found: bcftools [2023-08-19 22:55:17,029] multiqc [DEBUG ] No samples found: featureCounts [2023-08-19 22:55:17,037] multiqc [DEBUG ] No samples found: fgbio [2023-08-19 22:55:17,052] multiqc [DEBUG ] No samples found: dragen [2023-08-19 22:55:17,059] multiqc [DEBUG ] No samples found: dedup [2023-08-19 22:55:17,064] multiqc [DEBUG ] No samples found: damageprofiler [2023-08-19 22:55:17,093] multiqc [DEBUG ] No samples found: biobambam2 [2023-08-19 22:55:17,099] multiqc [DEBUG ] No samples found: mtnucratio [2023-08-19 22:55:17,101] multiqc [DEBUG ] No samples found: picard [2023-08-19 22:55:17,107] multiqc [DEBUG ] No samples found: prokka [2023-08-19 22:55:17,111] multiqc [DEBUG ] No samples found: samblaster [2023-08-19 22:55:17,122] multiqc [DEBUG ] No samples found: samtools [2023-08-19 22:55:17,128] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-08-19 22:55:17,134] multiqc [DEBUG ] No samples found: bamtools [2023-08-19 22:55:17,139] multiqc [DEBUG ] No samples found: jellyfish [2023-08-19 22:55:17,148] multiqc [DEBUG ] No samples found: vcftools [2023-08-19 22:55:17,156] multiqc [DEBUG ] No samples found: longranger [2023-08-19 22:55:17,164] multiqc [DEBUG ] No samples found: stacks [2023-08-19 22:55:17,171] multiqc [DEBUG ] No samples found: varscan2 [2023-08-19 22:55:17,189] multiqc [DEBUG ] No samples found: bbmap [2023-08-19 22:55:17,194] multiqc [DEBUG ] No samples found: bismark [2023-08-19 22:55:17,200] multiqc [DEBUG ] No samples found: biscuit [2023-08-19 22:55:17,208] multiqc [DEBUG ] No samples found: hicexplorer [2023-08-19 22:55:17,215] multiqc [DEBUG ] No samples found: hicup [2023-08-19 22:55:17,220] multiqc [DEBUG ] No samples found: hicpro [2023-08-19 22:55:17,225] multiqc [DEBUG ] No samples found: salmon [2023-08-19 22:55:17,231] multiqc [DEBUG ] No samples found: kallisto [2023-08-19 22:55:17,237] multiqc [DEBUG ] No samples found: slamdunk [2023-08-19 22:55:17,248] multiqc [DEBUG ] No samples found: star [2023-08-19 22:55:17,255] multiqc [DEBUG ] No samples found: hisat2 [2023-08-19 22:55:17,261] multiqc [DEBUG ] No samples found: tophat [2023-08-19 22:55:17,267] multiqc [DEBUG ] No samples found: bowtie2 [2023-08-19 22:55:17,273] multiqc [DEBUG ] No samples found: bowtie1 [2023-08-19 22:55:17,278] multiqc [DEBUG ] No samples found: snpsplit [2023-08-19 22:55:17,283] multiqc [DEBUG ] No samples found: kat [2023-08-19 22:55:17,288] multiqc [DEBUG ] No samples found: leehom [2023-08-19 22:55:17,294] multiqc [DEBUG ] No samples found: adapterRemoval [2023-08-19 22:55:17,299] multiqc [DEBUG ] No samples found: clipandmerge [2023-08-19 22:55:17,304] multiqc [DEBUG ] No samples found: cutadapt [2023-08-19 22:55:17,309] multiqc [DEBUG ] No samples found: flexbar [2023-08-19 22:55:17,314] multiqc [DEBUG ] No samples found: kaiju [2023-08-19 22:55:17,320] multiqc [DEBUG ] No samples found: kraken [2023-08-19 22:55:17,325] multiqc [DEBUG ] No samples found: malt [2023-08-19 22:55:17,331] multiqc [DEBUG ] No samples found: trimmomatic [2023-08-19 22:55:17,336] multiqc [DEBUG ] No samples found: sickle [2023-08-19 22:55:17,344] multiqc [DEBUG ] No samples found: skewer [2023-08-19 22:55:17,349] multiqc [DEBUG ] No samples found: sortmerna [2023-08-19 22:55:17,354] multiqc [DEBUG ] No samples found: biobloomtools [2023-08-19 22:55:17,359] multiqc [DEBUG ] No samples found: fastq_screen [2023-08-19 22:55:17,365] multiqc [DEBUG ] No samples found: afterqc [2023-08-19 22:55:17,371] multiqc [DEBUG ] No samples found: fastp [2023-08-19 22:55:17,599] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S2_D3_PBMC_BCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S2_D3_PBMC_GEX' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S2_D3_PBMC_SP' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S2_D3_PBMC_TCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S3_D7_PBMC_BCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S3_D7_PBMC_GEX' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S3_D7_PBMC_SP' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S3_D7_PBMC_TCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S4_D28_PBMC_GEX' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S4_D28_PBMC_SP' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n01_S4_D28_PBMC_TCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S2_D3_PBMC_BCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S2_D3_PBMC_GEX' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S2_D3_PBMC_SP' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S2_D3_PBMC_TCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S3_D7_PBMC_BCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S3_D7_PBMC_GEX' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S3_D7_PBMC_SP' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S3_D7_PBMC_TCell' [2023-08-19 22:55:17,600] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S4_D28_PBMC_GEX' [2023-08-19 22:55:17,601] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S4_D28_PBMC_SP' [2023-08-19 22:55:17,601] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HHMVCDRX3_n02_S4_D28_PBMC_TCell' [2023-08-19 22:55:17,667] multiqc [DEBUG ] No samples found: pycoqc [2023-08-19 22:55:17,673] multiqc [DEBUG ] No samples found: minionqc [2023-08-19 22:55:17,678] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-08-19 22:55:17,684] multiqc [DEBUG ] No samples found: clusterflow [2023-08-19 22:55:17,689] multiqc [DEBUG ] No samples found: bcl2fastq [2023-08-19 22:55:17,694] multiqc [DEBUG ] No samples found: interop [2023-08-19 22:55:17,700] multiqc [DEBUG ] No samples found: ivar [2023-08-19 22:55:17,706] multiqc [DEBUG ] No samples found: flash [2023-08-19 22:55:17,712] multiqc [DEBUG ] No samples found: seqyclean [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-08-19 22:55:17,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-08-19 22:55:17,713] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-08-19 22:55:17,713] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-08-19 22:55:17,713] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-08-19 22:55:17,713] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-08-19 22:55:17,743] multiqc [INFO ] Compressing plot data [2023-08-19 22:55:17,906] multiqc [INFO ] Report : multiqc_report.html [2023-08-19 22:55:17,906] multiqc [INFO ] Data : multiqc_data [2023-08-19 22:55:17,906] multiqc [DEBUG ] Moving data file from '/state/partition1/job-36680626/tmp5qythy5w/multiqc_data' to '/vast/gencore/GENEFLOW/work/44/f31833849662e879097c34747e75a3/merged/multiqc_data' [2023-08-19 22:55:18,180] multiqc [INFO ] MultiQC complete