[2023-08-02 23:51:16,705] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-02 23:51:16,705] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-08-02 23:51:16,706] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-02 23:51:16,708] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2023-08-02 23:51:16,708] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-08-02 23:51:16,708] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-02 23:51:16,887] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-08-02 23:51:16,887] multiqc [INFO ] This is MultiQC v1.9 [2023-08-02 23:51:16,887] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2023-08-02 23:51:16,887] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/ee/bb53aabc737d3245772af2b216dca5/1 [2023-08-02 23:51:16,887] multiqc [INFO ] Template : default [2023-08-02 23:51:16,887] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-08-02 23:51:16,887] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/ee/bb53aabc737d3245772af2b216dca5/1 [2023-08-02 23:51:16,888] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-08-02 23:51:16,888] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-36013621/tmpq_5hshg4 [2023-08-02 23:51:17,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col10_fastqc.html [2023-08-02 23:51:17,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col10_fastqc.html [2023-08-02 23:51:17,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col1_fastqc.html [2023-08-02 23:51:17,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col1_fastqc.html [2023-08-02 23:51:17,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col2_fastqc.html [2023-08-02 23:51:17,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col2_fastqc.html [2023-08-02 23:51:17,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col3_fastqc.html [2023-08-02 23:51:17,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col3_fastqc.html [2023-08-02 23:51:17,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col4_fastqc.html [2023-08-02 23:51:17,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col4_fastqc.html [2023-08-02 23:51:17,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col5_fastqc.html [2023-08-02 23:51:17,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col5_fastqc.html [2023-08-02 23:51:17,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col6_fastqc.html [2023-08-02 23:51:17,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col6_fastqc.html [2023-08-02 23:51:17,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col7_fastqc.html [2023-08-02 23:51:17,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col7_fastqc.html [2023-08-02 23:51:17,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col8_fastqc.html [2023-08-02 23:51:17,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col8_fastqc.html [2023-08-02 23:51:17,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col9_fastqc.html [2023-08-02 23:51:17,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate1Col9_fastqc.html [2023-08-02 23:51:17,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col10_fastqc.html [2023-08-02 23:51:17,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col10_fastqc.html [2023-08-02 23:51:17,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col1_fastqc.html [2023-08-02 23:51:17,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col1_fastqc.html [2023-08-02 23:51:17,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col2_fastqc.html [2023-08-02 23:51:17,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col2_fastqc.html [2023-08-02 23:51:18,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col3_fastqc.html [2023-08-02 23:51:18,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col3_fastqc.html [2023-08-02 23:51:18,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col4_fastqc.html [2023-08-02 23:51:18,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col4_fastqc.html [2023-08-02 23:51:18,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col5_fastqc.html [2023-08-02 23:51:18,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col5_fastqc.html [2023-08-02 23:51:18,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col6_fastqc.html [2023-08-02 23:51:18,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col6_fastqc.html [2023-08-02 23:51:18,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col7_fastqc.html [2023-08-02 23:51:18,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col7_fastqc.html [2023-08-02 23:51:18,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col8_fastqc.html [2023-08-02 23:51:18,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col8_fastqc.html [2023-08-02 23:51:18,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col9_fastqc.html [2023-08-02 23:51:18,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_Plate2Col9_fastqc.html [2023-08-02 23:51:18,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_undetermined_fastqc.html [2023-08-02 23:51:18,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n01_undetermined_fastqc.html [2023-08-02 23:51:18,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col10_fastqc.html [2023-08-02 23:51:18,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col10_fastqc.html [2023-08-02 23:51:18,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col1_fastqc.html [2023-08-02 23:51:18,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col1_fastqc.html [2023-08-02 23:51:18,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col2_fastqc.html [2023-08-02 23:51:18,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col2_fastqc.html [2023-08-02 23:51:18,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col3_fastqc.html [2023-08-02 23:51:18,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col3_fastqc.html [2023-08-02 23:51:19,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col4_fastqc.html [2023-08-02 23:51:19,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col4_fastqc.html [2023-08-02 23:51:19,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col5_fastqc.html [2023-08-02 23:51:19,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col5_fastqc.html [2023-08-02 23:51:19,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col6_fastqc.html [2023-08-02 23:51:19,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col6_fastqc.html [2023-08-02 23:51:19,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col7_fastqc.html [2023-08-02 23:51:19,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col7_fastqc.html [2023-08-02 23:51:19,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col8_fastqc.html [2023-08-02 23:51:19,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col8_fastqc.html [2023-08-02 23:51:19,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col9_fastqc.html [2023-08-02 23:51:19,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate1Col9_fastqc.html [2023-08-02 23:51:19,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col10_fastqc.html [2023-08-02 23:51:19,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col10_fastqc.html [2023-08-02 23:51:19,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col1_fastqc.html [2023-08-02 23:51:19,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col1_fastqc.html [2023-08-02 23:51:19,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col2_fastqc.html [2023-08-02 23:51:19,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col2_fastqc.html [2023-08-02 23:51:19,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col3_fastqc.html [2023-08-02 23:51:19,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col3_fastqc.html [2023-08-02 23:51:19,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col4_fastqc.html [2023-08-02 23:51:19,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col4_fastqc.html [2023-08-02 23:51:19,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col5_fastqc.html [2023-08-02 23:51:19,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col5_fastqc.html [2023-08-02 23:51:20,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col6_fastqc.html [2023-08-02 23:51:20,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col6_fastqc.html [2023-08-02 23:51:20,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col7_fastqc.html [2023-08-02 23:51:20,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col7_fastqc.html [2023-08-02 23:51:20,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col8_fastqc.html [2023-08-02 23:51:20,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col8_fastqc.html [2023-08-02 23:51:20,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col9_fastqc.html [2023-08-02 23:51:20,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_Plate2Col9_fastqc.html [2023-08-02 23:51:20,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_undetermined_fastqc.html [2023-08-02 23:51:20,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-GG345_l01_n02_undetermined_fastqc.html [2023-08-02 23:51:20,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:20,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-08-02 23:51:22,626] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-02 23:51:22,628] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-02 23:51:22,648] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2023-08-02 23:51:22,649] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-08-02 23:51:22,660] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-08-02 23:51:22,667] multiqc [DEBUG ] No samples found: conpair [2023-08-02 23:51:22,679] multiqc [DEBUG ] No samples found: peddy [2023-08-02 23:51:22,689] multiqc [DEBUG ] No samples found: somalier [2023-08-02 23:51:22,695] multiqc [DEBUG ] No samples found: methylQA [2023-08-02 23:51:22,706] multiqc [DEBUG ] No samples found: mosdepth [2023-08-02 23:51:22,711] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-08-02 23:51:22,715] multiqc [DEBUG ] No samples found: qualimap [2023-08-02 23:51:22,724] multiqc [DEBUG ] No samples found: preseq [2023-08-02 23:51:22,729] multiqc [DEBUG ] No samples found: quast [2023-08-02 23:51:22,735] multiqc [DEBUG ] No samples found: qorts [2023-08-02 23:51:22,743] multiqc [DEBUG ] No samples found: rna_seqc [2023-08-02 23:51:22,750] multiqc [DEBUG ] No samples found: rockhopper [2023-08-02 23:51:22,758] multiqc [DEBUG ] No samples found: rsem [2023-08-02 23:51:22,772] multiqc [DEBUG ] No samples found: rseqc [2023-08-02 23:51:22,777] multiqc [DEBUG ] No samples found: busco [2023-08-02 23:51:22,792] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-08-02 23:51:22,798] multiqc [DEBUG ] No samples found: disambiguate [2023-08-02 23:51:22,804] multiqc [DEBUG ] No samples found: supernova [2023-08-02 23:51:22,819] multiqc [DEBUG ] No samples found: deeptools [2023-08-02 23:51:22,824] multiqc [DEBUG ] No samples found: sargasso [2023-08-02 23:51:22,831] multiqc [DEBUG ] No samples found: verifybamid [2023-08-02 23:51:22,846] multiqc [DEBUG ] No samples found: mirtrace [2023-08-02 23:51:22,862] multiqc [DEBUG ] No samples found: happy [2023-08-02 23:51:22,867] multiqc [DEBUG ] No samples found: mirtop [2023-08-02 23:51:22,878] multiqc [DEBUG ] No samples found: homer [2023-08-02 23:51:22,886] multiqc [DEBUG ] No samples found: macs2 [2023-08-02 23:51:22,891] multiqc [DEBUG ] No samples found: theta2 [2023-08-02 23:51:22,897] multiqc [DEBUG ] No samples found: snpeff [2023-08-02 23:51:22,905] multiqc [DEBUG ] No samples found: gatk [2023-08-02 23:51:22,912] multiqc [DEBUG ] No samples found: htseq [2023-08-02 23:51:22,924] multiqc [DEBUG ] No samples found: bcftools [2023-08-02 23:51:22,929] multiqc [DEBUG ] No samples found: featureCounts [2023-08-02 23:51:22,936] multiqc [DEBUG ] No samples found: fgbio [2023-08-02 23:51:22,957] multiqc [DEBUG ] No samples found: dragen [2023-08-02 23:51:22,964] multiqc [DEBUG ] No samples found: dedup [2023-08-02 23:51:22,969] multiqc [DEBUG ] No samples found: damageprofiler [2023-08-02 23:51:22,996] multiqc [DEBUG ] No samples found: biobambam2 [2023-08-02 23:51:23,003] multiqc [DEBUG ] No samples found: mtnucratio [2023-08-02 23:51:23,005] multiqc [DEBUG ] No samples found: picard [2023-08-02 23:51:23,013] multiqc [DEBUG ] No samples found: prokka [2023-08-02 23:51:23,021] multiqc [DEBUG ] No samples found: samblaster [2023-08-02 23:51:23,031] multiqc [DEBUG ] No samples found: samtools [2023-08-02 23:51:23,037] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-08-02 23:51:23,043] multiqc [DEBUG ] No samples found: bamtools [2023-08-02 23:51:23,048] multiqc [DEBUG ] No samples found: jellyfish [2023-08-02 23:51:23,057] multiqc [DEBUG ] No samples found: vcftools [2023-08-02 23:51:23,064] multiqc [DEBUG ] No samples found: longranger [2023-08-02 23:51:23,078] multiqc [DEBUG ] No samples found: stacks [2023-08-02 23:51:23,088] multiqc [DEBUG ] No samples found: varscan2 [2023-08-02 23:51:23,109] multiqc [DEBUG ] No samples found: bbmap [2023-08-02 23:51:23,116] multiqc [DEBUG ] No samples found: bismark [2023-08-02 23:51:23,127] multiqc [DEBUG ] No samples found: biscuit [2023-08-02 23:51:23,138] multiqc [DEBUG ] No samples found: hicexplorer [2023-08-02 23:51:23,151] multiqc [DEBUG ] No samples found: hicup [2023-08-02 23:51:23,160] multiqc [DEBUG ] No samples found: hicpro [2023-08-02 23:51:23,165] multiqc [DEBUG ] No samples found: salmon [2023-08-02 23:51:23,177] multiqc [DEBUG ] No samples found: kallisto [2023-08-02 23:51:23,182] multiqc [DEBUG ] No samples found: slamdunk [2023-08-02 23:51:23,187] multiqc [DEBUG ] No samples found: star [2023-08-02 23:51:23,193] multiqc [DEBUG ] No samples found: hisat2 [2023-08-02 23:51:23,201] multiqc [DEBUG ] No samples found: tophat [2023-08-02 23:51:23,207] multiqc [DEBUG ] No samples found: bowtie2 [2023-08-02 23:51:23,214] multiqc [DEBUG ] No samples found: bowtie1 [2023-08-02 23:51:23,221] multiqc [DEBUG ] No samples found: snpsplit [2023-08-02 23:51:23,228] multiqc [DEBUG ] No samples found: kat [2023-08-02 23:51:23,233] multiqc [DEBUG ] No samples found: leehom [2023-08-02 23:51:23,239] multiqc [DEBUG ] No samples found: adapterRemoval [2023-08-02 23:51:23,245] multiqc [DEBUG ] No samples found: clipandmerge [2023-08-02 23:51:23,251] multiqc [DEBUG ] No samples found: cutadapt [2023-08-02 23:51:23,256] multiqc [DEBUG ] No samples found: flexbar [2023-08-02 23:51:23,269] multiqc [DEBUG ] No samples found: kaiju [2023-08-02 23:51:23,275] multiqc [DEBUG ] No samples found: kraken [2023-08-02 23:51:23,282] multiqc [DEBUG ] No samples found: malt [2023-08-02 23:51:23,288] multiqc [DEBUG ] No samples found: trimmomatic [2023-08-02 23:51:23,296] multiqc [DEBUG ] No samples found: sickle [2023-08-02 23:51:23,303] multiqc [DEBUG ] No samples found: skewer [2023-08-02 23:51:23,309] multiqc [DEBUG ] No samples found: sortmerna [2023-08-02 23:51:23,315] multiqc [DEBUG ] No samples found: biobloomtools [2023-08-02 23:51:23,321] multiqc [DEBUG ] No samples found: fastq_screen [2023-08-02 23:51:23,331] multiqc [DEBUG ] No samples found: afterqc [2023-08-02 23:51:23,337] multiqc [DEBUG ] No samples found: fastp [2023-08-02 23:51:23,528] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2023-08-02 23:51:23,844] multiqc [DEBUG ] No samples found: pycoqc [2023-08-02 23:51:23,853] multiqc [DEBUG ] No samples found: minionqc [2023-08-02 23:51:23,860] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-08-02 23:51:23,876] multiqc [DEBUG ] No samples found: clusterflow [2023-08-02 23:51:23,881] multiqc [DEBUG ] No samples found: bcl2fastq [2023-08-02 23:51:23,897] multiqc [DEBUG ] No samples found: interop [2023-08-02 23:51:23,902] multiqc [DEBUG ] No samples found: ivar [2023-08-02 23:51:23,916] multiqc [DEBUG ] No samples found: flash [2023-08-02 23:51:23,922] multiqc [DEBUG ] No samples found: seqyclean [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,922] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-08-02 23:51:23,923] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-08-02 23:51:23,972] multiqc [INFO ] Compressing plot data [2023-08-02 23:51:24,321] multiqc [INFO ] Report : multiqc_report.html [2023-08-02 23:51:24,321] multiqc [INFO ] Data : multiqc_data [2023-08-02 23:51:24,321] multiqc [DEBUG ] Moving data file from '/state/partition1/job-36013621/tmpq_5hshg4/multiqc_data' to '/vast/gencore/GENEFLOW/work/ee/bb53aabc737d3245772af2b216dca5/1/multiqc_data' [2023-08-02 23:51:24,488] multiqc [INFO ] MultiQC complete