DefaultProject
Project
150 + 150
Lane 1 (R1 + R2)
150 + 150
Lane 2 (R1 + R2)
849,018,219
Polonies
93.3%
Q30
N/A
Index Assignment
254.410
Assigned Yield (Gb)
6 + 0
Lane 1 (I1 + I2)
6 + 0
Lane 2 (I1 + I2)
N/A
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX GCACAT 4,989,211 0.5876
50th IG25withDOX_rep2 ACTTGA 17,620,286 2.0754
95th IG25noDOX_rep2 CGATGT 24,998,070 2.9444
All Indices
# Sample I1 I2 Polonies % Polonies
1 IG13noDOX_rep2 TATAAT 26,261,519 3.0932
2 IG13noDOX_rep1 TACAGC 25,128,594 2.9597
3 IG25noDOX_rep2 CGATGT 24,998,070 2.9444
4 IG26noDOX_rep3 GCCAAT 24,739,977 2.9140
5 IG26noDOX_rep2 ACAGTG 24,275,927 2.8593
6 IG26noDOX_rep1 TGACCA 23,840,676 2.8080
7 IG15noDOX_rep2 ATGAGC 22,890,812 2.6962
8 IG13noDOX_rep3 TCATTC 22,720,105 2.6760
9 IG13withDOX_rep1 TCCCGA 22,595,012 2.6613
10 IG18withDOX_rep1 CTCAGA 22,573,225 2.6587
11 IG18noDOX_rep1 CGGAAT 21,960,393 2.5866
12 IG18noDOX_rep2 CTAGCT 21,838,468 2.5722
13 IG26withDOX_rep3 CTTGTA 21,229,800 2.5005
14 IG15noDOX_rep3 ATTCCT 21,055,789 2.4800
15 IG15noDOX_rep1 ACTGAT 20,998,545 2.4733
16 IG26withDOX_rep1 TAGCTT 20,451,302 2.4088
17 IG18noDOX_rep3 CTATAC 20,229,873 2.3827
18 IG13withDOX_rep3 TCGGCA 20,196,045 2.3788
19 IG13withDOX_rep2 TCGAAG 19,440,166 2.2897
20 IG25noDOX_rep3 TTAGGC 18,608,203 2.1917
21 IG18withDOX_rep2 GACGAC 18,474,572 2.1760
22 IG19withDOX_rep3 CCAACA 18,168,845 2.1400
23 IG15withDOX_rep1 CAAAAG 18,066,431 2.1279
24 IG19withDOX_rep1 CATGGC 18,049,572 2.1259
25 IG18withDOX_rep3 TAATCG 17,973,299 2.1170
26 IG25withDOX_rep3 GATCAG 17,726,869 2.0879
27 IG25withDOX_rep2 ACTTGA 17,620,286 2.0754
28 IG25withDOX_rep1 CAGATC 17,565,924 2.0690
29 IG26withDOX_rep2 GGCTAC 16,969,065 1.9987
30 IG19withDOX_rep2 CATTTT 16,262,717 1.9155
31 IG27withDOX_rep1 CCGTCC 15,603,535 1.8378
32 IG27noDOX_rep2 AGTTCC 15,048,085 1.7724
33 IG28withDOX_rep2 GAGTGG 14,847,722 1.7488
34 IG27noDOX_rep1 AGTCAA 14,560,336 1.7150
35 IG15withDOX_rep2 CAACTA 14,497,957 1.7076
36 IG27noDOX_rep3 ATGTCA 14,069,536 1.6572
37 IG19noDOX_rep2 CACTCA 13,287,023 1.5650
38 IG28noDOX_rep2 GTGGCC 13,247,118 1.5603
39 IG28noDOX_rep1 GTGAAA 12,036,705 1.4177
40 IG19noDOX_rep3 CAGGCG 11,909,536 1.4027
41 IG27withDOX_rep3 GTCCGC 11,495,136 1.3539
42 IG28noDOX_rep3 GTTTCG 11,393,613 1.3420
43 IG28withDOX_rep1 CGTACG 10,937,428 1.2882
44 IG27withDOX_rep2 GTAGAG 10,227,947 1.2047
45 IG25noDOX_rep1 ATCACG 8,942,716 1.0533
46 IG28withDOX_rep3 GGTAGC 8,468,882 0.9975
47 PhiX ATGTCG 5,726,672 0.6745
48 PhiX CACAGA 5,684,017 0.6695
49 PhiX TGTGTC 5,199,302 0.6124
50 PhiX GCACAT 4,989,211 0.5876
51 IG19noDOX_rep1 CACGAT 3,911,745 0.4607
52 IG15withDOX_rep3 CACCGG 23,916 0.0028
43.2
Mean Q
97.3%
Q30
91.0%
Q40
N/A
Reads eliminated
150.0
Mean read length
N/A
Trim type
N/A
Min read length