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101023_JaneSample

Generated on 01/02/24 with pycoQC 2.5.2

General run summary

All ReadsPass ReadsStatus71.7371.73Run Duration (h)512511Active Channels11Number of Runids00Number of Barcodes

Basecall summary

All ReadsPass ReadsStatus2.606093e+62.083886e+6Reads2.127501e+101.742400e+10Bases1090011100N5079808220Median Read Length14.67215.768Median PHRED score

Basecalled reads length

10%1,590.0025%3,574.00Median7,941.0075%11,203.0090%14,488.00510251002510002510k25100k25010002000300040005000
Density10%Aa25%AaMedianAa75%Aa90%AaBasecalled lengthRead densityAll ReadsPass Reads

Basecalled reads PHRED quality

10%6.0325%8.32Median14.6475%17.1090%18.6051015202530350500100015002000
Density10%Aa25%AaMedianAa75%Aa90%AaRead quality scoresRead densityAll ReadsPass Reads

Basecalled reads length vs reads PHRED quality

510251002510002510k25100k255101520253035
DensityMedian024.148.372.496.5120.7144.8168.9Basecalled lengthPHRED quality scoresAll ReadsPass Reads

Output over experiment time

50%19.12h1,305,157 reads75%33.93h1,955,820 reads90%46.86h2,344,154 reads99%65.97h2,580,344 reads100%71.72h2,606,092 reads1020304050607000.5M1M1.5M2M2.5M3M
CumulativeInterval50%Aa75%Aa90%Aa99%Aa100%AaExperiment time (h)CountAll ReadsPass ReadsAll BasesPass Bases

Read length over experiment time

102030405060701002510002510k25100k2
MaxMin75%25%MedianExperiment time (h)Alignment lengthAll ReadsPass Reads

Read quality over experiment time

1020304050607051015202530
MaxMin75%25%MedianExperiment time (h)Mean read PHRED qualityAll ReadsPass Reads

Channel activity over time

c 1c 27c 53c 79c 105c 131c 157c 183c 209c 235c 261c 287c 313c 339c 365c 391c 417c 443c 469c 49510203040506070
100200300400500600700800Channel idExperiment time (h)All ReadsPass ReadsAll BasesPass Bases

Source summary files

  • /scratch/cgsb/gencore/out/Carlton/101023_JaneSample/Jane_Sample_sheared_20kb/20231010_1610_X3_FAW99081_6ef05048/sequencing_summary_FAW99081_6ef05048_af3c3c8c.txt