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[PARENTDIR]Parent Directory  -
[DIR]000000000-DKBVB/2023-06-26 19:32 -
[DIR]000000000-KWDDC/2023-06-26 23:42 -
[DIR]000000000-L387F/2023-06-26 22:52 -
[DIR]000000000-L396B/2023-06-26 19:11 -
[DIR]101023_JaneSample/2024-02-01 18:52 -
[DIR]AA00/2024-02-05 19:40 -
[DIR]fcid-test/2023-06-05 19:30 -
[DIR]GENEFLOW/2024-01-22 23:46 -
[DIR]H52YHDSX7/2023-07-05 10:24 -
[DIR]HFHGFDRX5/2024-10-28 20:12 -
[DIR]HHWYGAFX5/2023-06-05 23:30 -
[DIR]HMGL2DRX2/2023-07-05 21:40 -
[DIR]IldarMix2/2025-02-17 16:54 -
[DIR]merged/2023-06-05 19:13 -
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[TXT]2019-nCoV_total_clean.vcf2020-08-06 09:59 301K
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[TXT]2025-02-03_SideA_Ildar_QC.html2025-02-07 17:04 6.1M
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[TXT]abundance.txt2023-02-14 20:54 30M
[TXT]adoring_feynman_MAD_report.nb.html2021-03-15 18:10 5.5M
[TXT]af.csv2020-07-16 00:40 103K
[TXT]af_data.csv2020-07-14 22:09 103K
[ ]AllVarSet_Tool_Comparison.pdf2020-12-03 20:26 159K
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[ ]all_snps_latest.tar.gz2020-08-12 12:29 707M
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[IMG]barcode_counts_pamld_w_priors.png2024-10-29 21:10 34K
[TXT]Bases2Fastq.log2025-01-22 20:31 25K
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[IMG]CV-53_2103.png2020-07-16 19:00 24K
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[TXT]desperate_mercator_af_data.csv2020-10-29 18:38 528K
[TXT]determined_easley_af_data.csv2020-09-10 23:15 4.5M
[TXT]dff.csv2021-12-22 03:14 5.3M
[TXT]DI-tector_counts.txt2021-02-09 00:50 37K
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[TXT]dreamy_caravaggio_af_data.csv2021-09-06 00:21 6.8M
[TXT]DS-TEST-2_gigantic_williams_af_data.csv2021-12-04 21:07 39M
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[TXT]dualrnaseq_mqc.html2021-08-11 16:58 1.4M
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[TXT]execution_timeline.html2020-11-12 21:33 79K
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[TXT]final_summary_FAX99810_014530c3_a5fce5e1.txt2024-03-18 11:55 698
[IMG]flowchart.png2021-04-01 19:09 478K
[ ]freebayes-af.tar.gz2020-07-30 15:55 580K
[ ]freebayes-F_0.01.tar.gz2020-08-03 20:17 726K
[TXT]friendly_leakey_af_data.csv2020-11-17 22:31 654K
[TXT]full_AF_0.02_frac_1.0_varscan.vcf2021-06-24 01:14 24K
[TXT]full_AF_0.1_frac_1.0_tims.ann.vcf2021-05-06 01:36 35K
[TXT]full_AF_random_frac_0.1_tims_H1N1_7.ann.vcf2021-05-21 17:31 30K
[TXT]full_AF_random_frac_0.1_tims_H1N1_10.ann.vcf2021-05-25 16:51 27K
[TXT]full_AF_random_frac_0.1_tims_new.ann.vcf2021-05-12 02:02 30K
[TXT]full_AF_random_frac_1.0_freebayes-default.vcf2021-05-06 01:32 78K
[TXT]full_golden.vcf2021-04-23 02:31 31K
[ ]gatk4-se.tar.gz2021-10-06 21:11 5.4K
[ ]genes.gff2021-05-15 02:27 1.3K
[ ]genes.gtf2021-07-02 15:59 948
[ ]gp.pdf2023-05-11 00:21 176K
[IMG]gpu_utilization_6H.png2024-08-10 21:28 212K
[IMG]gpu_utilization_12H.png2024-08-10 21:28 252K
[TXT]gresham_libs_pools_runs.csv2022-03-09 15:25 116K
[ ]H1N1-1.tar.gz2021-11-29 20:51 9.1M
[TXT]H1N1-1_AF_0.05_frac_1.0_tims.ann.new.vcf2021-05-04 14:39 33K
[TXT]H1N1-1_furious_northcutt_af_data.csv2021-11-29 20:51 32M
[TXT]H1N1-1_furious_northcutt_MAD_report.nb.html2021-11-29 20:51 3.0M
[TXT]H1N1-2-cov_data.tsv2022-03-22 22:30 69M
[TXT]H1N1-2_nostalgic_thompson_af_data.csv2022-03-22 22:30 38M
[TXT]H1N1-4_berserk_fermat_af_data.csv2022-04-07 01:41 57M
[TXT]H1N1-4_distraught_wilson_af_data.csv2022-02-19 20:04 40M
[TXT]H1N1-4_festering_laplace_af_data.csv2022-02-19 17:03 39M
[TXT]H1N1-6_sick_euler_af_data.csv2022-04-11 01:43 62M
[TXT]H1N1-6_sick_euler_cov_data.tsv2022-04-11 01:43 69M
[TXT]H1N1-7_agitated_cov_data.tsv2022-05-03 13:41 69M
[TXT]H1N1-7_agitated_thompson_af_data.csv2022-05-02 20:27 59M
[ ]H1N1.fa2022-08-11 21:30 13K
[TXT]H1N1.vcf2021-04-04 20:02 75K
[TXT]H1N1_pipeline_trace.txt2021-12-04 20:58 450K
[ ]H1N1_vcfs.tar.gz2021-10-01 17:45 261M
[TXT]H1N1_wise_watson_af_data.csv2021-09-29 12:41 10M
[TXT]H1N1_wise_watson_MAD_report.nb.html2021-10-02 16:35 2.9M
[ ]H2HY5AFX3_SC_D_0_R1.pdf2021-08-15 21:00 8.2K
[TXT]H3N2-1-cov_data.tsv2022-03-22 22:31 69M
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[ ]H3N2-1.tar.gz2021-11-12 16:23 9.6M
[TXT]H3N2-1_reverent_jepsen_af_data.csv2022-03-22 22:31 36M
[TXT]H3N2-1_ridiculous_venter_af_data.csv2021-11-12 16:23 34M
[TXT]H3N2-1_ridiculous_venter_MAD_report.nb.html2021-11-12 16:14 2.7M
[TXT]H3N2-2_evil_laplace_af_data.csv2022-02-21 19:08 35M
[TXT]H3N2-2_gigantic_wozniak_af_data.csv2022-04-07 01:41 55M
[TXT]H3N2-3_loving_torvalds_af_data.csv2022-04-11 01:43 56M
[TXT]H3N2-3_loving_torvalds_cov_data.tsv2022-04-11 01:44 69M
[TXT]H3N2-4_thirsty_volta_af_data.csv2022-05-10 17:50 55M
[TXT]H3N2-4_thirsty_volta_cov_data.tsv2022-05-10 17:50 69M
[ ]H3N2.fa2021-07-08 16:11 13K
[ ]H3N2.gtf2021-07-08 16:07 588
[TXT]H3N2_2_m2_AF_0.02_golden.vcf2021-11-11 20:47 8.8K
[TXT]H3N2_2_maniac_khorana_af_data.csv2021-11-11 20:47 33M
[TXT]H3N2_2_maniac_khorana_MAD_report.Rmd2021-11-11 20:44 10K
[TXT]H3N2_cranky_bernard_af_data.csv2021-10-01 17:44 12M
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[ ]H3N2_vcfs.tar.gz2021-10-01 17:43 263M
[TXT]H3N72DRX2_bcs.txt2022-04-28 19:05 76M
[ ]H9N2.fa2021-07-08 16:12 13K
[ ]H9N2.gtf2021-07-14 21:11 588
[TXT]HGVMYDRXY_multiqc_report.html2021-08-30 21:22 11M
[TXT]HGVMYDRXY_salmon.merged.gene_counts.tsv2021-08-30 21:21 11M
[TXT]high_pauling_af_data.csv2021-08-20 22:04 12M
[TXT]high_poitras_af_data.csv2020-12-19 23:02 1.3M
[TXT]HKMLKDRXX_1_multiqc_report.html2021-03-02 15:54 3.9M
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[TXT]HKVNYDRXX_1.csv2021-02-19 15:59 11K
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[TXT]HM57KDRXY_host_quantification_uniquely_mapped_htseq.tsv2021-12-24 01:33 4.1M
[TXT]HM57KDRXY_pathogen_quantification_uniquely_mapped_htseq.tsv2021-12-24 01:33 2.9M
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[TXT]HNVCKDRXX_2_multiqc_report.html2021-03-03 16:05 3.8M
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[TXT]HVHVCDRXX_multiqc_report.html2021-03-08 15:07 12M
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[TXT]HW100_R1_fastqc.html2025-02-03 18:42 242K
[IMG]igv_snapshot.png2021-02-16 00:50 38K
[IMG]igv_snapshot_h3n2_downsampling_fractions.png2021-11-24 01:51 36K
[TXT]Ildar_Pool1_Adept_Third_Party_Run_Manifest.csv2025-03-03 22:54 1.8K
[TXT]Ildar_Pool2_Adept_Third_Party_Run_Manifest.csv2025-02-17 19:54 1.8K
[ ]imgs_subset-2.tar.gz2022-05-03 14:00 101M
[ ]imgs_subset.tar.gz2022-05-02 21:59 101M
[TXT]IndexAssignment.csv2025-01-22 20:03 2.2K
[TXT]insane_hoover_af_data.csv2020-12-10 03:05 328K
[ ]InterOp.tar2024-09-06 21:28 215M
[ ]K4LKV-cov-plot-test-sleepy_sammet.CoveragePlot.log10.100.50.pdf2022-03-15 20:09 109K
[IMG]latest-flowchart.png2020-06-30 23:20 249K
[ ]lauring_flu_vcfs.tar.gz2021-11-30 21:28 19M
[ ]LAURING_snps.tar2022-04-07 01:43 175M
[ ]LAURING_snps.tar.gz2022-04-07 01:29 21M
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[TXT]layers.py2024-10-10 21:39 5.7K
[TXT]MAD-1_AF_random.vcf2020-12-03 19:09 23K
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[TXT]MAD_report.nb.html2021-05-14 01:29 3.5M
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[TXT]main.py2024-10-30 16:32 9.6K
[ ]mapping_stats_samples_percentage.pdf2021-08-15 21:00 20K
[ ]mapping_stats_samples_total_reads.pdf2021-08-15 21:00 20K
[ ]mapping_stats_star_samples_percentage.pdf2021-08-14 17:39 17K
[ ]mapping_stats_star_samples_total_reads.pdf2021-08-15 21:01 20K
[TXT]marvelous_bernard_af_data.csv2021-09-20 23:48 13M
[ ]MASCT-CD_Primer_Sheet.xlsx2022-06-28 18:19 12K
[TXT]mb190_indels_gatk.vcf2021-07-16 19:11 15M
[TXT]mb190_indels_reform_gatk.vcf2021-07-16 19:09 14M
[TXT]mb190_snps_gatk.vcf2021-07-16 19:11 138M
[TXT]mb190_snps_reform_gatk.vcf2021-07-16 19:09 137M
[IMG]mdd_barcode_counts.png2024-10-22 18:34 32K
[TXT]mismatch.txt2023-08-10 16:51 640K
[ ]model.bam2021-04-27 00:40 334M
[ ]model.pth2022-05-02 21:14 319M
[TXT]modes_af_report.html2021-04-22 01:07 3.4M
[TXT]modes_test_AF_0.1.vcf2021-03-22 22:21 11K
[IMG]mouse-hoxa13-cov.png2021-06-30 17:47 50K
[TXT]movieRatingsDeidentified.csv2021-09-30 16:46 1.1M
[TXT]multiqc_flu_human.html2021-08-14 17:36 1.1M
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[ ]Mus_musculus.GRCm38_mb190.fa.gz2021-07-17 23:56 789M
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[TXT]mycsvfile.csv2020-07-03 20:40 107K
[ ]new-1-new.o2020-12-16 19:39 15K
[ ]new-2.out2020-12-02 22:54 15K
[ ]new_vcfs.tar.gz2021-09-20 23:47 694M
[TXT]out_augmented_original.txt2024-10-30 16:31 98K
[TXT]out_augmented_transformed.txt2024-10-30 16:31 98K
[TXT]out_beam.txt2024-10-10 21:32 141K
[TXT]out_greedy.txt2024-10-10 23:05 142K
[TXT]out_original.txt2024-10-30 16:31 98K
[TXT]out_transformed.txt2024-10-30 16:31 98K
[IMG]pamld_barcode_counts.png2024-10-22 18:29 34K
[TXT]pathogen_quantification_uniquely_mapped_htseq.tsv2021-09-08 16:58 1.4M
[IMG]PB2.png2021-11-30 20:48 29K
[ ]pd-no-dedup.tar.gz2021-12-07 21:20 1.8M
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[ ]pngs.tar.gz2021-11-30 20:40 142K
[TXT]pore_scan_data_FAX99810_014530c3_a5fce5e1.csv2024-03-18 11:55 18M
[ ]prefixx1.CoveragePlot.100.50.pdf2022-03-12 17:33 110K
[TXT]prickly_albattani_af_data.csv2020-08-07 02:16 14M
[TXT]pycoqc_test1_out.html2023-11-28 22:36 6.0M
[TXT]qualimapReport.html2024-10-14 22:12 20K
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[ ]readsim-all-latest-1-all-snps.tar.gz2020-09-17 15:16 4.9M
[ ]readsim-ivar-varscan-2-all-snps.tar.gz2020-09-10 23:56 4.2M
[ ]readsim-latest-4-golden-vcfs.tar.gz2020-08-28 21:40 14K
[ ]readsim-latest-4-snps.tar.gz2020-08-26 22:48 702M
[TXT]readsim-new-fb_golden.vcf2020-07-27 14:43 31K
[ ]read_1.fastq2023-03-20 15:23 22M
[ ]read_2.fastq2023-03-20 15:24 22M
[IMG]reformed-mouse-hoxa13-cov.png2021-06-30 17:16 9.7K
[ ]reform_testing.tar.gz2024-08-07 16:58 8.9M
[ ]REP1_filtered_snps.tar.gz2021-10-13 17:13 8.6M
[ ]REP1_freebayes_standard.tar.gz2022-05-03 14:41 1.9M
[ ]REP1_no_bams.tar.gz2022-04-26 23:17 392M
[ ]rep1_vcfs.tar.gz2021-09-28 20:17 155M
[ ]REP2_filtered_snps.tar.gz2021-10-13 17:14 42M
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[TXT]report.html2023-07-10 19:06 2.8M
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[TXT]revisions_report_1.html2021-08-15 21:03 3.5M
[TXT]rnaseq-merged-counts.tsv2021-03-09 17:09 121M
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[TXT]salmon.merged.gene_counts.tsv2021-01-25 20:09 4.8M
[TXT]salmon.merged.gene_counts.txt2021-01-25 20:11 4.8M
[ ]sample_vcfs.tar.gz2021-05-19 18:25 71K
[ ]sample_vcfs_ann.tar.gz2021-05-26 16:46 223K
[TXT]SARS-CoV2-1-cov_data.tsv2022-03-23 13:59 183M
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[TXT]SARS-CoV2-2_jovial_bell_af_data.csv2022-04-13 01:01 92M
[TXT]SARS-CoV2-2_jovial_bell_cov_data.tsv2022-04-13 01:01 183M
[TXT]SARS-CoV2-3_cov_data.tsv2022-05-10 17:49 183M
[TXT]SARS-CoV2-3_kickass_mcclintock_af_data.csv2022-05-10 17:48 94M
[ ]SARS-CoV2.fa2022-04-12 16:00 30K
[TXT]SARS_CoV2_af_report.nb.html2021-03-15 22:59 4.6M
[ ]sequences_dataframe.pkl2024-11-24 17:40 10M
[TXT]sequencing_summary_FAX99810_014530c3_a5fce5e1.txt2024-03-18 11:55 2.2G
[TXT]sick_miescher_af_data.csv2020-10-28 23:46 501K
[TXT]sick_payne_af_data.csv2021-09-20 23:50 11M
[TXT]sick_poisson_af_data.csv2020-12-11 03:38 416K
[TXT]sites.txt2023-08-14 16:27 132K
[TXT]sleepy_blackwell_af_data.csv2020-07-16 20:45 273K
[ ]sleepy_coulomb.tar.gz2021-04-27 00:29 3.5M
[TXT]sleepy_coulomb_af_data.csv2021-04-23 02:25 7.4M
[TXT]sleepy_coulomb_af_report.html2021-04-23 02:26 5.5M
[TXT]sleepy_noyce_af_data.csv2020-11-19 22:11 2.6M
[TXT]sleepy_tuckerman_af_data.csv2021-07-06 17:58 7.2M
[TXT]snpEff_summary.html2023-01-09 19:38 229K
[TXT]software_versions.csv2020-11-12 21:35 346
[TXT]soggy_stallman_af_data.csv2020-08-16 16:01 5.1M
[TXT]soggy_wright_af_data.csv2020-11-02 15:16 7.7M
[TXT]stoic_miescher_af_data.csv2021-03-22 22:17 579K
[TXT]suspicious_snyder_af_data.csv2020-12-20 01:22 634K
[TXT]t-MAD_report.nb.html2021-03-11 22:30 3.2M
[TXT]t3-real-error-rate_golden_yonath_af_data.csv2021-10-08 16:57 188K
[TXT]t3-real-error-rate_golden_yonath_MAD_report.nb.html2021-10-08 16:37 1.5M
[TXT]t7_cranky_volta_af_data.csv2021-10-29 02:08 130K
[TXT]t8_awesome_cray_af_data.csv2021-10-29 22:31 2.4M
[TXT]t8_gloomy_payne_af_data.csv2021-10-30 00:00 2.4M
[TXT]t9_soggy_goldberg_af_data.csv2021-11-01 18:40 2.7M
[TXT]t9_soggy_goldberg_MAD_report.nb.html2021-11-01 18:30 2.1M
[TXT]temperature_adjust_data_FAX99810_014530c3_a5fce5e1.csv2024-03-18 11:55 130
[TXT]tender_gilbert_af_data.csv2020-09-17 14:53 8.3M
[TXT]test-report.html2021-03-22 23:14 3.2M
[TXT]thirsty_lavoisier_af_data.csv2020-08-26 22:35 19M
[IMG]ThumbnailLane1.png2025-02-07 18:15 2.5M
[ ]timo-out-full_AF_0.1_frac_1.0.tar.gz2021-05-06 01:35 279K
[ ]timo-out-H1N1-1_AF_0.05_frac_1.0.tar.gz2021-05-04 14:37 279K
[ ]timo-test.tar.gz2021-09-20 20:08 15M
[TXT]tMAD_report.nb.html2021-10-02 16:33 2.9M
[ ]TONKIN-HILL_desperate_raman_cov_data.tsv.gz2022-12-12 17:34 154M
[TXT]tt-MAD_report.nb.html2021-03-12 16:04 3.3M
[TXT]tv2_MAD_report.nb.html2021-05-29 17:28 3.4M
[IMG]unreformed-mouse-hoxa13-cov.png2021-06-30 17:16 6.0K
[ ]up.fa2024-02-22 19:43 1.5K
[TXT]usage-report.html2020-06-30 23:17 3.2M
[TXT]utils.py2024-10-30 16:32 2.5K
[TXT]v.html2020-12-03 22:00 83K
[TXT]Variants_AllCallers.html2020-12-19 23:30 1.5M
[TXT]Variants_AllCallers.md2020-12-03 20:26 32K
[TXT]vc-usg-rprt.html2020-08-03 16:58 3.0M
[TXT]Vic-1-cov_data.tsv2022-03-22 22:30 69M
[ ]Vic-1.tar.gz2021-11-29 20:54 9.9M
[TXT]Vic-1_jolly_becquerel_af_data.csv2021-11-29 20:54 32M
[TXT]Vic-1_jolly_becquerel_MAD_report.nb.html2021-11-29 20:54 2.8M
[TXT]Vic-1_silly_lorenz_af_data.csv2022-03-22 22:30 40M
[TXT]Vic-2_disturbed_sanger_af_data.csv2022-04-11 01:44 66M
[TXT]Vic-2_disturbed_sanger_cov_data.tsv2022-04-11 01:44 69M
[TXT]Vic-2_thirsty_einstein_af_data.csv2022-02-23 14:41 34M
[TXT]Vic-3_fervent_raman_af_data.csv2022-05-10 17:47 59M
[TXT]Vic-3_fervent_raman_af_report_snp_counts.csv2022-05-10 17:46 69
[TXT]Vic-3_fervent_raman_cov_data.tsv2022-05-10 17:48 69M
[TXT]Vic_evil_noyce_af_data.csv2021-10-04 15:40 12M
[TXT]Vic_evil_noyce_MAD_report.nb.html2021-10-04 15:41 2.9M
[ ]Vic_vcfs.tar.gz2021-10-04 15:42 5.8M
[TXT]vignette.html2022-10-26 15:05 4.4M
[TXT]wise_kalam_af_data.csv2020-09-10 20:35 4.5M
[TXT]workflow.dot2023-07-10 19:03 3.6K
[IMG]workflow.svg2023-07-11 19:50 22K
[ ]yeast_test.pkl2024-05-30 15:31 777M
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