FastQCFastQC Report
Thu 19 Jul 2018
HY7YMBGX5_n01_C_AND_R_NLP7_H3K27AC.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY7YMBGX5_n01_C_AND_R_NLP7_H3K27AC.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59663826
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCGT34050.012.0257559
CCGGGCC39600.011.22436470
AGGGCAG83750.010.9085451
GCGGGGG23700.010.7809120
AGGGGCG43300.010.5091251
CGCACGG24950.010.24109324
CCATGCG61050.09.97520639
AGGGTTT683250.09.8516891
CGCCTAG53950.09.79597938
ATGAGTC387150.09.6922941
GCCCGCG43900.09.56665558
GTCGCGA43650.09.54146964
GCGTCGC64500.08.95386521
GCGATCC67200.08.80184243
GGCTGTC76150.08.778812
GGGCCCG79650.08.74403311
AGGCCGT46100.08.6559551
AGGGACA144850.08.5786891
GTCCCGA65100.08.5484536
GGGAACG71950.08.5129372
Produced by FastQC (version 0.11.5)