FastQCFastQC Report
Thu 19 Jul 2018
HY7YMBGX5_n01_C_AND_R_NLP7_GR.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHY7YMBGX5_n01_C_AND_R_NLP7_GR.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45815985
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTAGGA199800.013.20734560
GAGCTAG209350.012.58818458
AGCCATC210950.012.49307569
AGCTAGG210450.012.47248559
CGAATGA221100.012.01469140
GAAGGTC227300.011.6410574
AAGGTCT238800.011.1977065
TTATATC249750.010.70688348
TAGGAAA254150.010.49308462
CGTATGC16700.010.05956444
GTCTGAA271300.09.8943478
ACTAACG140700.09.87497710
AGAGTTA270750.09.85106321
CTAACGG142300.09.71473511
TAACGGC140550.09.71122312
GCCAAGA285800.09.36834917
AAAAGCC291550.09.315412566
GAGTTAT297300.09.1950322
CCTGACG105500.09.08950314
CGACGCT103800.09.03685835
Produced by FastQC (version 0.11.5)