HWCMHBGX5_n01_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWCMHBGX5_n01_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16686660
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTG	21772	0.13047548161225794	No Hit
GAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG	21276	0.12750304734440565	No Hit
CGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTAT	18900	0.11326412835162937	No Hit
CGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACC	18386	0.11018382348534697	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	17997	0.10785261999705154	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	2365	57.421753	28
CTCGTAT	2070	56.304184	44
TATGCCG	2100	55.833168	48
TCGTATG	2200	55.204388	45
GTCACGA	2600	52.231396	29
GTATGCC	2310	51.818027	47
CACGAGT	2670	51.123756	31
ATGCCGT	2515	46.06307	49
CACGTCT	3090	45.19418	14
TGGATAT	2995	44.640404	37
GCCGTCT	2345	44.626335	51
ACGTCTG	3170	44.16404	15
ACACGTC	3285	42.831184	13
CTGAACT	3335	42.083206	19
TGCCGTC	2660	41.841606	50
GAACTCC	3425	40.670925	21
CGTATGC	3040	39.374886	46
TCACGAG	3595	38.943447	30
GTGGATA	3630	37.120995	36
GAGCACA	3980	35.26435	9