HWCMHBGX5_n01_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWCMHBGX5_n01_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16833913
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG	20426	0.12133839589167415	No Hit
CGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTAT	19115	0.11355054525944146	No Hit
CTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTG	18825	0.111827832304943	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	17676	0.10500232477143015	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGTAA	1935	57.33821	36
CGTACGT	2165	51.570484	34
CCGTACG	2195	50.865494	33
ACGTAAT	2275	49.076378	37
GTATGCC	1130	47.389	47
TCGTATG	1090	45.595963	45
CTCGTAT	1100	43.59056	44
TATGCCG	1205	43.27766	48
CACGTCT	2580	43.275227	14
ACGTCTG	2635	42.238625	15
ACACGTC	2670	41.68555	13
CTGAACT	2735	41.59028	19
GAACTCC	2970	37.94594	21
ATGCCGT	1245	37.67038	49
GTCACCG	3015	37.032093	29
TAATCTC	1720	36.017044	40
TCAGATT	2165	35.405342	2
GAGCACA	3190	35.11017	9
TATCTCG	3620	33.454258	5
GGATATC	3725	33.450787	2