HW2NGBGX5_n01_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	44523957
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	335301	0.7530799654666812	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	223128	0.5011414416737487	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACGACATCTCGTATGC	67403	0.15138591567681192	TruSeq Adapter, Index 6 (97% over 36bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65609	0.14735662421019766	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	62963	0.14141375619422145	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGC	53427	0.11999607312530645	TruSeq Adapter, Index 2 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGTCTG	39210	47.405045	15
CACGTCT	40930	45.660713	14
CAGTCAC	37425	45.37654	27
CGTCTGA	41420	44.807156	16
CACACGT	44920	41.95566	12
CCAGTCA	42780	40.874607	26
GCACACG	47135	39.88095	11
ACACGTC	47710	39.744373	13
GTCTGAA	47640	39.507988	17
TCTGAAC	49370	38.619568	18
CTGAACT	49530	38.20515	19
TCGGAAG	49465	38.002026	3
ATCGGAA	50035	37.92955	2
ACTCCAG	49460	37.72832	23
AGCACAC	51360	37.670277	10
TCCAGTC	48150	37.021137	25
GTCACGA	15850	35.839516	29
CTCCAGT	50910	35.57597	24
AGTCACC	21545	35.495792	28
AGTCACG	20655	35.38158	28