HW2NGBGX5_n01_ZmTARGET.0523-183U.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_ZmTARGET.0523-183U.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11965908
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT	63473	0.5304486713419492	TruSeq Adapter, Index 14 (97% over 44bp)
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	14457	0.12081824463300236	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	12381	0.10346895530201303	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	8390	58.10974	46
CTCGTAT	8350	57.591244	44
TATGCCG	8475	57.526928	48
TCGTATG	8480	57.41023	45
CGTATCT	8415	56.81437	39
TTCCGTA	8800	56.039177	36
CCGTATC	8755	54.967777	38
TCCGTAT	8925	54.509224	37
GTATGCC	8995	54.279125	47
TATCTCG	8855	53.990166	41
GTATCTC	9745	49.310913	40
AGTTCCG	10185	48.866276	34
GTTCCGT	10235	48.250587	35
AGTCACA	10340	48.203674	28
TCTCGTA	10170	46.974724	43
CAGTCAC	11125	44.86526	27
ACAGTTC	11095	44.857567	32
TCACAGT	11340	43.705795	30
ACGTCTG	11515	43.64677	15
TGAAAAA	11510	43.330696	64