HW2NGBGX5_n01_ZmTARGET.0523-183S2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_ZmTARGET.0523-183S2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9722353
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121921	1.2540277029644984	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATGGCATCTCGTATGC	47610	0.48969627002845917	TruSeq Adapter, Index 12 (97% over 37bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22268	0.22903920480978218	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	13034	0.13406219667193733	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	12655	0.13016396339445813	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	12295	0.12646115605964933	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	7100	56.7874	44
TCGTATG	6905	55.603607	43
TATGCCG	7310	55.586933	46
CTCGTAT	6825	55.07591	42
GTATGCC	7945	52.24547	45
ACGTCTG	10445	48.31963	15
AGTCACC	10445	48.154808	28
CAGTCAC	10530	47.7331	27
CACGTCT	10720	47.308388	14
TCTCGTA	8000	46.33064	41
GTCTGAA	11540	43.916004	17
ACACGTC	11960	42.66688	13
ATGCCGT	9085	42.646217	47
CCAGTCA	11910	42.496204	26
CACACGT	11970	42.456234	12
CGTCTGA	12030	42.069054	16
CCGTCTT	8680	41.93407	50
AAAAGGG	9860	41.531315	70
TCGGAAG	12470	41.00566	3
GCCGTCT	8895	40.291145	49