HW2NGBGX5_n01_ZmTARGET.0521-ZmARR2U.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_ZmTARGET.0521-ZmARR2U.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10298399
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	29781	0.2891808717063691	TruSeq Adapter, Index 6 (100% over 50bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	18110	0.17585257669663024	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	10549	0.10243339765724749	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4490	52.07064	43
CTCGTAT	4460	51.479195	42
TATGCCG	4550	51.153225	46
CGTATGC	4670	50.06363	44
GTATGCC	4980	46.80689	45
AGTCACG	5370	43.73487	28
GCCAATA	5490	42.841843	34
TATCTCG	5425	42.322273	39
CGCCAAT	5585	42.11311	33
CCAATAT	5730	41.291748	35
ATATCTC	6010	38.84369	38
TCTCGTA	6150	37.73125	41
CAATATC	6205	37.39753	36
AATATCT	6395	36.34133	37
ACGTCTG	6580	36.22402	15
GTCTGAA	6940	34.545856	17
GTCACGC	6955	34.371876	29
TGAAAAA	6900	34.189487	62
AAAAGGG	6230	34.15722	70
CAGTCAC	6970	33.795902	27