HW2NGBGX5_n01_ZmTARGET.0521-6435U.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_ZmTARGET.0521-6435U.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9221952
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	29765	0.322762469377416	TruSeq Adapter, Index 4 (100% over 50bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	19345	0.2097712067900592	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	12009	0.13022188794736733	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	12006	0.13018935687368574	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	11874	0.12875798963169618	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	10036	0.10882728515611445	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT	9623	0.10434884067928353	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4325	53.24761	43
CTCGTAT	4165	53.192333	42
TATGCCG	4435	51.690178	46
GTATGCC	4705	48.872673	45
CGTATGC	5070	45.906734	44
ACTGACC	5250	44.065647	32
AGTCACT	5560	41.67441	28
TCTCGTA	5495	39.871685	41
CCAATCT	5510	39.509495	37
ACCAATC	5595	39.284595	36
CAATCTC	5780	37.90611	38
GACCAAT	6095	37.095524	35
ACGTCTG	6435	36.71483	15
AATCTCG	5955	36.61564	39
AAAAGGG	5855	36.46411	70
CTGACCA	6460	36.028774	33
GTCACTG	6485	35.83824	29
GCTTGAA	6385	35.795944	59
CACTGAC	6505	35.673473	31
CACGTCT	6745	35.130817	14