FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_26_GR_Dam_bZIP1_6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_26_GR_Dam_bZIP1_6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11724506
Sequences flagged as poor quality0
Sequence length76
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGATCT436500.066.4749412
AGGATCA418800.066.3094712
GAGGATC1402450.066.2166111
GGATCTA37250.065.6742913
AGGATCG205750.065.43613412
CCGAGGA1427450.065.322549
CGAGGAT1429450.065.1081810
GGTCGCG1463650.065.040681
GGATCTT117200.064.7106613
GGATCAA91600.064.6853613
GGATCTC142900.064.28973413
CGGCCGA1510550.064.210816
GGCCGAG1519200.063.895967
GGATCCA110800.063.64727413
GCCGAGG1532000.063.2955938
GTCGCGG1520300.062.9182322
GGATCCC75800.062.70109613
GGATCAT118750.062.53977213
GGATCTG158050.062.4452113
GGATCCG71150.061.78161613
Produced by FastQC (version 0.11.5)